Bioconductor / SummarizedExperiment
A container (S4 class) for matrix-like assays
☆35Updated last week
Alternatives and similar repositories for SummarizedExperiment:
Users that are interested in SummarizedExperiment are comparing it to the libraries listed below
- Representation and manipulation of genomic intervals☆45Updated last week
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Save and load your R sessions faster using parallel compression☆25Updated 6 years ago
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated 2 months ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Glimma R package☆50Updated 7 months ago
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Bioconductor package for management of multi-assay data☆71Updated this week
- Brings SummarizedExperiment to the tidyverse☆26Updated 10 months ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆13Updated 2 weeks ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Explore design matrices interactively with R/Shiny☆37Updated last week
- Functional enrichment analysis of high-throughput omics data☆20Updated 3 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- R interface to genome annotation files and the UCSC genome browser☆32Updated 3 weeks ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆20Updated last year
- Transcript quantification import with automatic metadata detection☆68Updated 2 months ago
- Statistical power studies for multi-omics experiments.☆31Updated 3 months ago
- An R for fast and flexible DNA methylation analysis☆32Updated 9 months ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 weeks ago
- Foundation of integer range manipulation in Bioconductor☆22Updated last week
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago