Alternatives and similar repositories for SummarizedExperiment

Users that are interested in SummarizedExperiment are comparing it to the libraries listed below

• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated last month
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆73Updated 3 weeks ago
• tgirke / systemPipeR
  Project Website:
  ☆54Updated 5 months ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆46Updated last year
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• tidyomics / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆29Updated 3 weeks ago
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆43Updated 7 months ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated last week
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆25Updated this week
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated last month
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 months ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆79Updated last week
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 3 weeks ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆60Updated last year
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 4 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 2 weeks ago
• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆38Updated 3 months ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆63Updated 10 months ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 5 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated 2 months ago
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆36Updated last week
• tidyomics / tidy-genomics-talk
  ☆17Updated 2 years ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆69Updated last month
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated last month
• aedin / PCAworkshop
  An introduction to matrix factorization and PCA and SVD.
  ☆41Updated 2 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 10 months ago