Bioconductor / SummarizedExperiment
A container (S4 class) for matrix-like assays
☆34Updated 3 months ago
Alternatives and similar repositories for SummarizedExperiment:
Users that are interested in SummarizedExperiment are comparing it to the libraries listed below
- Representation and manipulation of genomic intervals☆44Updated 3 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆27Updated this week
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- Visualise correlation results and test significancies of these☆21Updated 5 years ago
- Introduction to the Bioconductor project☆18Updated this week
- Brings SummarizedExperiment to the tidyverse☆26Updated 8 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated last week
- R package for benchmarking single cell analysis methods☆30Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Save and load your R sessions faster using parallel compression☆25Updated 6 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 8 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆18Updated last week
- Client for the Bioconductor AnnotationHub web resource☆17Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Functional enrichment analysis of high-throughput omics data☆20Updated last month
- Glimma R package☆50Updated 5 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Bioconductor package for management of multi-assay data☆71Updated last week
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Bioconductor package that makes BIG data pint-sized.☆20Updated last year
- Explore design matrices interactively with R/Shiny☆37Updated last month
- Template for building a bioconductor workshop package using github actions☆20Updated 7 months ago
- A General Framework for Consensus Partitioning☆61Updated last week
- Take command of your set enrichment analyses.☆21Updated this week
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago