A container (S4 class) for matrix-like assays
☆36Feb 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for SummarizedExperiment
Users that are interested in SummarizedExperiment are comparing it to the libraries listed below
Sorting:
- Foundation of integer range manipulation in Bioconductor☆23Oct 30, 2025Updated 4 months ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 4 months ago
- Representation and manipulation of genomic intervals☆46Dec 8, 2025Updated 2 months ago
- A unified framework for working transparently with on-disk and in-memory array-like datasets☆28Oct 30, 2025Updated 4 months ago
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Oct 30, 2025Updated 4 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 7 months ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆33Dec 4, 2025Updated 2 months ago
- Efficient manipulation of biological strings☆65Jan 6, 2026Updated last month
- Bioconductor package for management of multi-assay data☆73Nov 17, 2025Updated 3 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Helper script for bioconductor/bioconductor_docker☆13Feb 9, 2026Updated 2 weeks ago
- ☆33Feb 6, 2026Updated 3 weeks ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 10 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆76Jun 30, 2025Updated 8 months ago
- Automate package and project setup for Bioconductor packages☆54Mar 21, 2025Updated 11 months ago
- CRAN Package For Managing Bioconductor Packages☆75Nov 13, 2025Updated 3 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Clone of the Bioconductor repository for the SingleR package.☆199Updated this week
- Template for building a bioconductor workshop package using github actions☆22Jun 26, 2025Updated 8 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- ☆11Dec 17, 2025Updated 2 months ago
- Toolkit for Single-Cell Velocity☆59Jul 8, 2025Updated 7 months ago
- Visualization of Functional Enrichment Result☆256Updated this week
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 5 years ago
- An R package for multivariate adaptive shrinkage.☆93Nov 7, 2024Updated last year
- ☆71May 28, 2025Updated 9 months ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Oct 10, 2023Updated 2 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated 3 weeks ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Mar 10, 2022Updated 3 years ago
- High-performance sparse data representation and manipulation in R☆11Dec 16, 2025Updated 2 months ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Apr 8, 2022Updated 3 years ago
- Brings SummarizedExperiment to the tidyverse☆30Dec 22, 2025Updated 2 months ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- R/Bioconductor package for working with 10x scATACseq data☆41Nov 13, 2023Updated 2 years ago