R shiny app for interactive microbiome analysis
β55Sep 18, 2026Updated this week
Alternatives and similar repositories for animalcules
Users that are interested in animalcules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)β22Mar 12, 2026Updated 6 months ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Tools for visualising microbial community amplicon dataβ74Nov 3, 2025Updated 10 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.β19Jul 31, 2025Updated last year
- β57Mar 14, 2024Updated 2 years ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ37Oct 26, 2020Updated 5 years ago
- β13Nov 28, 2018Updated 7 years ago
- Count and compare 16S rRNA genes within a genusβ17Aug 1, 2024Updated 2 years ago
- an R package to biotype a communityβ14Oct 19, 2021Updated 4 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resisβ¦β58Sep 15, 2026Updated last week
- Assessing the quality of prokaryotic genomes, filtering and dereplicationβ11Aug 26, 2022Updated 4 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.β129Jul 28, 2026Updated last month
- Kraken(2) database based on the GTDB projectβ28Dec 20, 2018Updated 7 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samplesβ20Nov 23, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ready-made Taxonomic Weights Repositoryβ25Mar 31, 2022Updated 4 years ago
- Parser for Ghost Koalaβ10Aug 23, 2018Updated 8 years ago
- Microbiome analysisβ59Updated this week
- bioBakery tools for meta'omic profilingβ324Aug 4, 2026Updated last month
- Hydrocarbon biodegradation gene annotationβ19Jul 14, 2022Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β54Jun 14, 2025Updated last year
- Orchestrating Microbiome Analysisβ111Updated this week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iβ¦β359Mar 16, 2026Updated 6 months ago
- β15Feb 7, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- β23Sep 27, 2019Updated 6 years ago
- An R package for downstream data analysis of microbiome omics dataβ292Updated this week
- Snakemake workflow to map and quantify microbial genomes in metagenomic readsβ14Oct 10, 2025Updated 11 months ago
- Statistical Analysis of Metagenomic Profilesβ94Updated this week
- A companion R package for the MicrobiomeAnalyst web serverβ132Updated this week
- Remove contaminated contigs from genomes using k-mers and taxonomies.β60Nov 3, 2023Updated 2 years ago
- Integrated Network Analysis Pipelineβ19Dec 19, 2024Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then searβ¦β31Jan 24, 2025Updated last year
- β44Nov 20, 2017Updated 8 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- mapping files for MetaCyc pathwayβ14Sep 14, 2019Updated 7 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.β622Updated this week
- Count Regression for Correlated Observations with the Beta-binomialβ108Nov 13, 2025Updated 10 months ago
- Pipeline for major biological analyses.β35Mar 30, 2022Updated 4 years ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biologyβ25May 22, 2019Updated 7 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achievβ¦β26Jun 9, 2021Updated 5 years ago
- A complete pipeline for metagenomic analysisβ454Aug 28, 2026Updated 3 weeks ago