R shiny app for interactive microbiome analysis
☆56Jun 5, 2025Updated 10 months ago
Alternatives and similar repositories for animalcules
Users that are interested in animalcules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆23Mar 12, 2026Updated last month
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 5 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆35Oct 26, 2020Updated 5 years ago
- ☆13Nov 28, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- ☆58Mar 14, 2024Updated 2 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Jul 31, 2025Updated 8 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆126Mar 30, 2026Updated 2 weeks ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Ready-made Taxonomic Weights Repository☆26Mar 31, 2022Updated 4 years ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- Microbiome analysis☆55Mar 26, 2026Updated 3 weeks ago
- bioBakery tools for meta'omic profiling☆312Jun 3, 2025Updated 10 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆49Apr 3, 2026Updated last week
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated 10 months ago
- Orchestrating Microbiome Analysis☆108Mar 26, 2026Updated 3 weeks ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆341Mar 16, 2026Updated last month
- An R package for downstream data analysis of microbiome omics data☆274Apr 9, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆43Nov 20, 2017Updated 8 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 6 months ago
- ☆23Sep 27, 2019Updated 6 years ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Statistical Analysis of Metagenomic Profiles☆94Jan 26, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Updated this week
- ☆14Feb 7, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for major biological analyses.☆36Mar 30, 2022Updated 4 years ago
- ARG normalization by mapping to the ARO ontology.☆64Jul 30, 2025Updated 8 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 5 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- Integrated Network Analysis Pipeline☆18Dec 19, 2024Updated last year
- A complete pipeline for metagenomic analysis☆439Updated this week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Apr 9, 2026Updated last week