R shiny app for interactive microbiome analysis
β55Jun 5, 2025Updated last year
Alternatives and similar repositories for animalcules
Users that are interested in animalcules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)β22Mar 12, 2026Updated 5 months ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Tools for visualising microbial community amplicon dataβ74Nov 3, 2025Updated 9 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.β18Jul 31, 2025Updated last year
- β57Mar 14, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ37Oct 26, 2020Updated 5 years ago
- β13Nov 28, 2018Updated 7 years ago
- Count and compare 16S rRNA genes within a genusβ16Aug 1, 2024Updated 2 years ago
- an R package to biotype a communityβ14Oct 19, 2021Updated 4 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resisβ¦β57Jul 26, 2026Updated 2 weeks ago
- Assessing the quality of prokaryotic genomes, filtering and dereplicationβ11Aug 26, 2022Updated 3 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.β129Jul 28, 2026Updated 2 weeks ago
- Kraken(2) database based on the GTDB projectβ28Dec 20, 2018Updated 7 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samplesβ20Nov 23, 2024Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Ready-made Taxonomic Weights Repositoryβ25Mar 31, 2022Updated 4 years ago
- Parser for Ghost Koalaβ10Aug 23, 2018Updated 7 years ago
- Microbiome analysisβ58Aug 4, 2026Updated last week
- bioBakery tools for meta'omic profilingβ322Aug 4, 2026Updated last week
- Hydrocarbon biodegradation gene annotationβ19Jul 14, 2022Updated 4 years ago
- Orchestrating Microbiome Analysisβ110Aug 8, 2026Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iβ¦β358Mar 16, 2026Updated 4 months ago
- β15Feb 7, 2025Updated last year
- β23Sep 27, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for downstream data analysis of microbiome omics dataβ290Jul 28, 2026Updated 2 weeks ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic readsβ14Oct 10, 2025Updated 10 months ago
- Statistical Analysis of Metagenomic Profilesβ94Jul 2, 2026Updated last month
- A companion R package for the MicrobiomeAnalyst web serverβ133Updated this week
- Remove contaminated contigs from genomes using k-mers and taxonomies.β60Nov 3, 2023Updated 2 years ago
- Integrated Network Analysis Pipelineβ19Dec 19, 2024Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then searβ¦β31Jan 24, 2025Updated last year
- β44Nov 20, 2017Updated 8 years ago
- mapping files for MetaCyc pathwayβ13Sep 14, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.β617May 20, 2026Updated 2 months ago
- Count Regression for Correlated Observations with the Beta-binomialβ108Nov 13, 2025Updated 9 months ago
- Pipeline for major biological analyses.β35Mar 30, 2022Updated 4 years ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biologyβ25May 22, 2019Updated 7 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achievβ¦β26Jun 9, 2021Updated 5 years ago
- A complete pipeline for metagenomic analysisβ451Updated this week
- Amplicon sequencing analysis workflow using DADA2 and QIIME2β256Updated this week