R shiny app for interactive microbiome analysis
β56Jun 5, 2025Updated 9 months ago
Alternatives and similar repositories for animalcules
Users that are interested in animalcules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)β22Mar 12, 2026Updated 2 weeks ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Tools for visualising microbial community amplicon dataβ72Nov 3, 2025Updated 4 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ34Oct 26, 2020Updated 5 years ago
- β13Nov 28, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- an R package to biotype a communityβ14Oct 19, 2021Updated 4 years ago
- β58Mar 14, 2024Updated 2 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplicationβ11Aug 26, 2022Updated 3 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.β17Jul 31, 2025Updated 7 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.β124Updated this week
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samplesβ20Nov 23, 2024Updated last year
- Ready-made Taxonomic Weights Repositoryβ26Mar 31, 2022Updated 3 years ago
- Count and compare 16S rRNA genes within a genusβ16Aug 1, 2024Updated last year
- Parser for Ghost Koalaβ10Aug 23, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Kraken(2) database based on the GTDB projectβ28Dec 20, 2018Updated 7 years ago
- Microbiome analysisβ55Updated this week
- bioBakery tools for meta'omic profilingβ309Jun 3, 2025Updated 9 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resisβ¦β49Mar 19, 2026Updated last week
- Hydrocarbon biodegradation gene annotationβ19Jul 14, 2022Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β55Jun 14, 2025Updated 9 months ago
- Orchestrating Microbiome Analysisβ108Mar 15, 2026Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iβ¦β339Mar 16, 2026Updated last week
- An R package for downstream data analysis of microbiome omics dataβ273Updated this week
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- β43Nov 20, 2017Updated 8 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic readsβ13Oct 10, 2025Updated 5 months ago
- β23Sep 27, 2019Updated 6 years ago
- A companion R package for the MicrobiomeAnalyst web serverβ131Updated this week
- mapping files for MetaCyc pathwayβ12Sep 14, 2019Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.β60Nov 3, 2023Updated 2 years ago
- Integrated Network Analysis Pipelineβ18Dec 19, 2024Updated last year
- Statistical Analysis of Metagenomic Profilesβ94Jan 26, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.β587Feb 21, 2026Updated last month
- NordVPN Threat Protection Proβ’ β’ AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- β14Feb 7, 2025Updated last year
- Pipeline for major biological analyses.β36Mar 30, 2022Updated 3 years ago
- ARG normalization by mapping to the ARO ontology.β63Jul 30, 2025Updated 7 months ago
- Count Regression for Correlated Observations with the Beta-binomialβ107Nov 13, 2025Updated 4 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achievβ¦β24Jun 9, 2021Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis