R shiny app for interactive microbiome analysis
☆55Sep 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for animalcules
Users that are interested in animalcules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆22Mar 12, 2026Updated 7 months ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 11 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆19Jul 31, 2025Updated last year
- ☆57Mar 14, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- ☆13Nov 28, 2018Updated 7 years ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆61Updated this week
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆10Aug 26, 2022Updated 4 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Jul 28, 2026Updated 2 months ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ready-made Taxonomic Weights Repository☆25Mar 31, 2022Updated 4 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- Microbiome analysis☆58Updated this week
- bioBakery tools for meta'omic profiling☆325Aug 4, 2026Updated 2 months ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- Orchestrating Microbiome Analysis☆112Updated this week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆358Mar 16, 2026Updated 6 months ago
- ☆15Feb 7, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆22Sep 27, 2019Updated 7 years ago
- An R package for downstream data analysis of microbiome omics data☆292Sep 30, 2026Updated 2 weeks ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated last year
- Statistical Analysis of Metagenomic Profiles☆93Sep 21, 2026Updated 3 weeks ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- ☆44Nov 20, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- mapping files for MetaCyc pathway☆14Sep 14, 2019Updated 7 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622Updated this week
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 11 months ago
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25May 22, 2019Updated 7 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆25Jun 9, 2021Updated 5 years ago
- A complete pipeline for metagenomic analysis☆453Aug 28, 2026Updated last month