wejlab / animalculesLinks
R shiny app for interactive microbiome analysis
☆56Updated 5 months ago
Alternatives and similar repositories for animalcules
Users that are interested in animalcules are comparing it to the libraries listed below
Sorting:
- Tools for visualising microbial community amplicon data☆69Updated 2 weeks ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 2 weeks ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Microbiome analysis☆53Updated last week
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- R implementation of the LEfSe method☆61Updated this week
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 4 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 5 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Updated this week
- R package for downstream Microbiome analysis☆30Updated 11 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Transform files to the microtable object with microeco package☆28Updated 2 weeks ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 2 months ago