nhanhocu / metamicrobiomeR
An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models
☆33Updated 4 years ago
Alternatives and similar repositories for metamicrobiomeR:
Users that are interested in metamicrobiomeR are comparing it to the libraries listed below
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆9Updated 3 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆36Updated 9 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- functions for analyzing phyloseq data☆27Updated 2 months ago
- ☆10Updated last week
- A set of R scripts for the analysis of microbial profiles☆41Updated 10 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated last year
- Repo for a Microbiome Protocol☆10Updated 6 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- ☆20Updated 4 years ago
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- Linear Decomposition Model☆24Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- ☆13Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- ☆40Updated 7 years ago