nhanhocu / metamicrobiomeRView external linksLinks
An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models
☆34Nov 12, 2020Updated 5 years ago
Alternatives and similar repositories for metamicrobiomeR
Users that are interested in metamicrobiomeR are comparing it to the libraries listed below
Sorting:
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- ☆12Jun 12, 2019Updated 6 years ago
- A continually expanding collection of microbiome analysis tools☆18Feb 24, 2022Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 4 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Aug 10, 2025Updated 6 months ago
- ☆12Apr 6, 2021Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- A companion R package for the MicrobiomeAnalyst web server☆131Updated this week
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated last year
- ☆14May 7, 2022Updated 3 years ago
- ☆28Feb 27, 2024Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated 11 months ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated 11 months ago
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆28May 1, 2020Updated 5 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- An R package for data analysis in microbial community ecology☆268Updated this week
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- microbiome R package☆308Aug 19, 2025Updated 5 months ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆33Jun 18, 2023Updated 2 years ago
- For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.☆66Aug 15, 2016Updated 9 years ago
- Microbiome research☆21May 24, 2022Updated 3 years ago
- genomic alignment similarity search tool☆18May 15, 2025Updated 9 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Feb 7, 2026Updated last week
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 3 months ago
- ☆11Apr 5, 2021Updated 4 years ago
- ☆22Nov 6, 2020Updated 5 years ago
- ☆42Nov 20, 2017Updated 8 years ago