An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models
☆34Nov 12, 2020Updated 5 years ago
Alternatives and similar repositories for metamicrobiomeR
Users that are interested in metamicrobiomeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆31Nov 23, 2022Updated 3 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 7 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ☆12Jun 12, 2019Updated 7 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A continually expanding collection of microbiome analysis tools☆19May 25, 2026Updated 4 months ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 6 years ago
- Metataxonomics with 16S-23S rRNA operon☆12May 13, 2026Updated 5 months ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12May 19, 2021Updated 5 years ago
- ☆44Nov 20, 2017Updated 8 years ago
- selbal: selection of balances for microbial signatures☆33Feb 24, 2025Updated last year
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 4 years ago
- ☆15May 7, 2022Updated 4 years ago
- ☆12Apr 6, 2021Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆24Sep 6, 2026Updated last month
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- microbiome R package☆319Sep 8, 2026Updated last month
- An R package for downstream data analysis of microbiome omics data☆292Sep 30, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Model-based Integration of Metabolite Observations and Species Abundances☆26Feb 21, 2020Updated 6 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated 2 years ago
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆11Apr 22, 2021Updated 5 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 3 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 5 months ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 3 years ago
- For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.☆66Aug 15, 2016Updated 10 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆13Aug 19, 2021Updated 5 years ago
- ☆16Mar 21, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- Microbiome research☆22May 24, 2022Updated 4 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆67Sep 3, 2020Updated 6 years ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆30May 1, 2020Updated 6 years ago
- Microbiome analysis☆58Updated this week