nhanhocu / metamicrobiomeRLinks
An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models
☆34Updated 5 years ago
Alternatives and similar repositories for metamicrobiomeR
Users that are interested in metamicrobiomeR are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 7 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- diversity estimation under ecological networks☆83Updated 4 months ago
- Linear Decomposition Model☆25Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- ☆13Updated 5 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- selbal: selection of balances for microbial signatures☆32Updated 10 months ago
- R package for microbial pangenomics☆24Updated 3 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- ☆20Updated 5 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 7 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year