Alternatives and similar repositories for metamicrobiomeR:

Users that are interested in metamicrobiomeR are comparing it to the libraries listed below

• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 8 months ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆50Updated 2 years ago
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆14Updated 2 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last week
• daisybio / namco
  ☆9Updated last month
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated 7 months ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆9Updated 6 years ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆24Updated last month
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆21Updated last year
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• knights-lab / BugBase
  ☆39Updated 7 years ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 9 years ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆31Updated 4 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated 9 months ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆27Updated last year
• vmaffei / dada2_to_picrust
  Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)
  ☆19Updated 6 years ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated last week