The is mostly a wrapper tool using phyloseq and microbiome R packages.
☆31Nov 23, 2022Updated 3 years ago
Alternatives and similar repositories for microbiomeutilities
Users that are interested in microbiomeutilities are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 6 years ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- microbiome R package☆319Sep 8, 2026Updated last month
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 10 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Jul 28, 2026Updated 2 months ago
- ☆15Mar 14, 2023Updated 3 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- ☆42Jul 31, 2017Updated 9 years ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 4 years ago
- An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.☆17Dec 21, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Apr 19, 2021Updated 5 years ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 8 months ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- ☆13Apr 5, 2021Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆40Jul 6, 2026Updated 3 months ago
- ☆12Jun 12, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 3 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆37Jul 15, 2026Updated 2 months ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆42Oct 1, 2026Updated last week
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 8 months ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Compare different differential abundance and expression methods☆54Mar 8, 2022Updated 4 years ago
- A visualization tool for Systems-Level Interactive Data Exploration☆13Jan 12, 2022Updated 4 years ago
- ☆12Dec 28, 2019Updated 6 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆396Sep 25, 2026Updated 2 weeks ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- A comprehensive and customizable R package for microbiome analysis.☆24Sep 6, 2026Updated last month
- selbal: selection of balances for microbial signatures☆33Feb 24, 2025Updated last year