The is mostly a wrapper tool using phyloseq and microbiome R packages.
☆32Nov 23, 2022Updated 3 years ago
Alternatives and similar repositories for microbiomeutilities
Users that are interested in microbiomeutilities are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Tutorials☆15Apr 2, 2022Updated 4 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- microbiome R package☆316Aug 19, 2025Updated 8 months ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆127Mar 30, 2026Updated last month
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- ☆15Mar 14, 2023Updated 3 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- ☆43Jul 31, 2017Updated 8 years ago
- ☆17Apr 19, 2021Updated 5 years ago
- An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.☆17Dec 21, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 2 months ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆144Apr 10, 2026Updated 3 weeks ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- ☆12Apr 5, 2021Updated 5 years ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Jun 12, 2019Updated 6 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆40Apr 12, 2026Updated 3 weeks ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Mar 23, 2026Updated last month
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆154Feb 5, 2026Updated 2 months ago
- A shiny package for microbiome functional enrichment analysis☆40Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- A visualization tool for Systems-Level Interactive Data Exploration☆12Jan 12, 2022Updated 4 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- Compare different differential abundance and expression methods☆53Mar 8, 2022Updated 4 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆386Nov 27, 2025Updated 5 months ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Apr 7, 2026Updated 3 weeks ago