CharlieCarpenter / tidyMicroLinks
tidyMicro GitHup Repository
☆19Updated 3 years ago
Alternatives and similar repositories for tidyMicro
Users that are interested in tidyMicro are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆19Updated 2 weeks ago
- ☆27Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Microbiota Analysis in R Easily☆11Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- ☆13Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- ☆19Updated last year
- ☆12Updated 7 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Non parametric differential abundance tests for microbiome data☆9Updated 4 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- Talk to the NCBI EUtils☆22Updated 4 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago