Various functions for analysis of microbial community data
β48Apr 15, 2026Updated 6 months ago
Alternatives and similar repositories for MicEco
Users that are interested in MicEco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Normalized Stochasticity Ratio in community assemblyβ31Oct 22, 2024Updated 2 years ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)β99Sep 24, 2026Updated last month
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing projectβ12May 25, 2022Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.β24Sep 6, 2026Updated last month
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- β26Jun 13, 2022Updated 4 years ago
- A web app for environmental DNA metabarcoding analysisβ11Dec 30, 2021Updated 4 years ago
- Workshop for NGS'18 conference, Barcelona 2018β24Nov 22, 2018Updated 7 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.β128Oct 25, 2026Updated last week
- Studying the statistical relationship between species and groups of sitesβ14Oct 11, 2026Updated 3 weeks ago
- Look Up Guild Information for Fungi in Rβ26Aug 14, 2026Updated 2 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISMEβ32Feb 23, 2018Updated 8 years ago
- An R package for downstream data analysis of microbiome omics dataβ295Oct 20, 2026Updated 2 weeks ago
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.β25Dec 17, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrationsβ15Nov 24, 2025Updated 11 months ago
- Visualize microbiome data with black magic ggtreeβ67Sep 3, 2020Updated 6 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)β76Dec 21, 2023Updated 2 years ago
- Metagenomics-related extended functionalities to samtoolsβ23Sep 2, 2026Updated 2 months ago
- REference Sequence annotation and CuRatIon Pipelineβ103Updated this week
- R package for microbiome biomarker discoveryβ199Feb 19, 2025Updated last year
- Phylocom R interfaceβ15Apr 21, 2023Updated 3 years ago
- Species richness with high diversityβ69Jun 25, 2026Updated 4 months ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demoβ¦β44Jul 19, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz filesβ32Jun 21, 2017Updated 9 years ago
- β22Nov 13, 2019Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β33Nov 12, 2020Updated 5 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USAβ35Nov 8, 2019Updated 6 years ago
- STAMPS 2018 courseβ14Aug 8, 2018Updated 8 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysisβ21Oct 22, 2026Updated last week
- Phylogenetic tools for Eco-phylogeneticsβ16Oct 10, 2024Updated 2 years ago
- Miscellaneous functions for metagenomic analysis.β53May 14, 2026Updated 5 months ago
- β20Jun 8, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- diversity estimation under ecological networksβ83Jun 16, 2026Updated 4 months ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experimentsβ11Jul 9, 2020Updated 6 years ago
- β44Nov 20, 2017Updated 8 years ago
- Count Regression for Correlated Observations with the Beta-binomialβ107Nov 13, 2025Updated 11 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.β19Jul 31, 2025Updated last year
- microbiome R packageβ320Oct 24, 2026Updated last week
- Utilities for community ecology analysisβ23Oct 2, 2020Updated 6 years ago