Various functions for analysis of microbial community data
β47Oct 1, 2025Updated 5 months ago
Alternatives and similar repositories for MicEco
Users that are interested in MicEco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing projectβ12May 25, 2022Updated 3 years ago
- Normalized Stochasticity Ratio in community assemblyβ30Oct 22, 2024Updated last year
- Look Up Guild Information for Fungi in Rβ23Mar 20, 2025Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)β93Oct 1, 2025Updated 5 months ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Metagenomics-related extended functionalities to samtoolsβ22Jul 6, 2023Updated 2 years ago
- Visualize microbiome data with black magic ggtreeβ68Sep 3, 2020Updated 5 years ago
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.β25Dec 17, 2024Updated last year
- β24Jun 13, 2022Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Nov 12, 2020Updated 5 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysisβ21Mar 19, 2026Updated last week
- An R package for downstream data analysis of microbiome omics dataβ272Mar 17, 2026Updated last week
- STAMPS 2018 courseβ15Aug 8, 2018Updated 7 years ago
- Phylocom R interfaceβ15Apr 21, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demoβ¦β39Jul 19, 2021Updated 4 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USAβ35Nov 8, 2019Updated 6 years ago
- diversity estimation under ecological networksβ83Jul 29, 2025Updated 7 months ago
- β43Nov 20, 2017Updated 8 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)β72Dec 21, 2023Updated 2 years ago
- R package for microbiome biomarker discoveryβ194Feb 19, 2025Updated last year
- β20Jun 8, 2020Updated 5 years ago
- Dynamic and static 3D plotting for veganβ19Mar 9, 2026Updated 2 weeks ago
- REference Sequence annotation and CuRatIon Pipelineβ98Feb 19, 2026Updated last month
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A comprehensive and customizable R package for microbiome analysis.β23Aug 10, 2025Updated 7 months ago
- A web app for environmental DNA metabarcoding analysisβ11Dec 30, 2021Updated 4 years ago
- Microbiome analysisβ55Updated this week
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtoolsβ36Mar 4, 2026Updated 3 weeks ago
- Workshop for NGS'18 conference, Barcelona 2018β24Nov 22, 2018Updated 7 years ago
- Informatic Sequence Classification Treesβ15Jan 23, 2026Updated 2 months ago
- An R package for microbial community analysis in an environmental contextβ67Sep 23, 2020Updated 5 years ago
- FUNGuild: parsing OTUs into functional guildsβ129Apr 26, 2024Updated last year
- micca - MICrobial Community Analysisβ19Feb 12, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Species richness with high diversityβ68Aug 5, 2025Updated 7 months ago
- functions for analyzing phyloseq dataβ28Feb 4, 2025Updated last year
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.β458Feb 13, 2026Updated last month
- Miscellaneous functions for metagenomic analysis.β53Feb 20, 2026Updated last month
- A simple plot libraryβ52Jul 23, 2017Updated 8 years ago
- MAGinator - Accurate SNV calling and profiling of MAGsβ26May 21, 2025Updated 10 months ago
- Scripts and documentations on the MCSC decontamination methodβ10Jun 13, 2023Updated 2 years ago