Russel88 / MicEcoLinks
Various functions for analysis of microbial community data
☆47Updated last month
Alternatives and similar repositories for MicEco
Users that are interested in MicEco are comparing it to the libraries listed below
Sorting:
- Look Up Guild Information for Fungi in R☆22Updated 8 months ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 3 months ago
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 weeks ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- dada2 formatted nifH database☆12Updated last year
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 2 months ago
- A web app for environmental DNA metabarcoding analysis☆11Updated 3 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆19Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- diversity estimation under ecological networks☆83Updated 3 months ago
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- functions for analyzing phyloseq data☆28Updated 9 months ago
- Miscellaneous functions for metagenomic analysis.☆51Updated last week
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- creating reference databases for amplicon sequencing☆41Updated 2 weeks ago
- Pairwise multilevel comparison using adonis☆79Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Normalized Stochasticity Ratio in community assembly☆28Updated last year
- ☆12Updated last year
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- ☆78Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆88Updated last month
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago