Various functions for analysis of microbial community data
β48Apr 15, 2026Updated 4 months ago
Alternatives and similar repositories for MicEco
Users that are interested in MicEco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing projectβ12May 25, 2022Updated 4 years ago
- Normalized Stochasticity Ratio in community assemblyβ31Oct 22, 2024Updated last year
- Look Up Guild Information for Fungi in Rβ26Aug 14, 2026Updated 3 weeks ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)β96Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Metagenomics-related extended functionalities to samtoolsβ23Updated this week
- Visualize microbiome data with black magic ggtreeβ68Sep 3, 2020Updated 6 years ago
- β26Jun 13, 2022Updated 4 years ago
- An R package for downstream data analysis of microbiome omics dataβ291Updated this week
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Nov 12, 2020Updated 5 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demoβ¦β43Jul 19, 2021Updated 5 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USAβ35Nov 8, 2019Updated 6 years ago
- Phylocom R interfaceβ15Apr 21, 2023Updated 3 years ago
- STAMPS 2018 courseβ14Aug 8, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dynamic and static 3D plotting for veganβ19Mar 9, 2026Updated 5 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)β75Dec 21, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysisβ21Aug 19, 2026Updated 2 weeks ago
- diversity estimation under ecological networksβ83Jun 16, 2026Updated 2 months ago
- β44Nov 20, 2017Updated 8 years ago
- Informatic Sequence Classification Treesβ15Jan 23, 2026Updated 7 months ago
- A comprehensive and customizable R package for microbiome analysis.β24Jun 12, 2026Updated 2 months ago
- β20Jun 8, 2020Updated 6 years ago
- REference Sequence annotation and CuRatIon Pipelineβ101Jul 21, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for microbiome biomarker discoveryβ201Feb 19, 2025Updated last year
- Microbiome analysisβ58Aug 4, 2026Updated last month
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtoolsβ37Jul 15, 2026Updated last month
- Code for running analyses carried out in Stegen et al. 2013, ISMEβ32Feb 23, 2018Updated 8 years ago
- Workshop for NGS'18 conference, Barcelona 2018β24Nov 22, 2018Updated 7 years ago
- An R package for microbial community analysis in an environmental contextβ67Sep 23, 2020Updated 5 years ago
- A web app for environmental DNA metabarcoding analysisβ11Dec 30, 2021Updated 4 years ago
- FUNGuild: parsing OTUs into functional guildsβ133Apr 26, 2024Updated 2 years ago
- functions for analyzing phyloseq dataβ28Feb 4, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Species richness with high diversityβ68Jun 25, 2026Updated 2 months ago
- A Shotgun Metagenome Annotation Pipelineβ24Mar 24, 2017Updated 9 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.β463Feb 13, 2026Updated 6 months ago
- micca - MICrobial Community Analysisβ19Feb 12, 2020Updated 6 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.β39Jul 12, 2022Updated 4 years ago
- MAGinator - Accurate SNV calling and profiling of MAGsβ28Mar 23, 2026Updated 5 months ago
- A simple plot libraryβ53Jul 23, 2017Updated 9 years ago