Gibbons-Lab / mbtoolsLinks
R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
☆23Updated last year
Alternatives and similar repositories for mbtools
Users that are interested in mbtools are comparing it to the libraries listed below
Sorting:
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆13Updated 7 months ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated this week
- ☆12Updated 7 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Microbiome research☆20Updated 3 years ago
- ☆27Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- ☆13Updated 5 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Microbiome profiling☆16Updated last month
- ☆13Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- ☆27Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 2 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago