Gibbons-Lab / mbtoolsLinks
R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
☆23Updated last year
Alternatives and similar repositories for mbtools
Users that are interested in mbtools are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- Microbiome research☆21Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- ☆27Updated 2 years ago
- ☆12Updated 8 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 5 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Linear Decomposition Model☆25Updated 2 years ago
- ☆13Updated 2 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- ☆28Updated last year
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- R shiny app for interactive microbiome analysis☆56Updated 4 months ago
- ☆14Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- ☆24Updated 5 years ago
- A modest re-desing update for the classic FastQC report.☆28Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago