MetScale: snakemake workflows to scale metagenome analyses
☆19May 15, 2025Updated 11 months ago
Alternatives and similar repositories for metscale
Users that are interested in metscale are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Nov 24, 2025Updated 5 months ago
- 2025 RAD microbes boot camp☆16Apr 9, 2026Updated 3 weeks ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Aug 21, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ☆13Feb 29, 2024Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- ☆10May 14, 2025Updated 11 months ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Jul 2, 2019Updated 6 years ago
- Metagenomic Analysis☆11Apr 5, 2021Updated 5 years ago
- Visualization tool for (meta)genome assembly graphs☆47Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jan 15, 2026Updated 3 months ago
- Microbiome analysis☆55Apr 24, 2026Updated last week
- ☆13Dec 3, 2024Updated last year
- ☆13Feb 14, 2023Updated 3 years ago
- Make coverage plots from bam files!☆15Mar 17, 2026Updated last month
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆11Mar 17, 2025Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 6 years ago
- ☆15May 1, 2025Updated last year
- A robust, extensible metagenomics pipeline☆175Apr 20, 2026Updated last week
- ☆20Mar 31, 2021Updated 5 years ago
- The Open Life Science Analysis Platform☆24Sep 16, 2025Updated 7 months ago
- Generative SDR demo☆13Jul 20, 2016Updated 9 years ago
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 5 years ago
- A package for designing compact and comprehensive capture probe sets.☆96Jan 25, 2024Updated 2 years ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆19Apr 18, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Jupyter demo repository for PancakesCon2020☆16Mar 23, 2020Updated 6 years ago
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆16Mar 31, 2022Updated 4 years ago
- Development repo for pyani-plus (the next iteration of pyani)☆32Updated this week
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 5 months ago
- Jupyter notebooks - A tool to write and share executable notebooks and data visualization☆10Feb 5, 2026Updated 2 months ago