The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics
☆20Dec 9, 2022Updated 3 years ago
Alternatives and similar repositories for seqtime
Users that are interested in seqtime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Apr 6, 2021Updated 5 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆231Apr 29, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 9 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated 7 months ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆19Apr 18, 2022Updated 4 years ago
- A model-based visualization method for microbiome data☆16Oct 27, 2025Updated 6 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Feb 6, 2020Updated 6 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 4 years ago
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 4 years ago
- microbiome R package☆316May 12, 2026Updated 2 weeks ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 9 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆92Oct 9, 2025Updated 7 months ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆40May 5, 2026Updated 3 weeks ago
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 2 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19Updated this week
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15May 13, 2026Updated last week
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 2 years ago
- ☆23Nov 6, 2020Updated 5 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆88Nov 3, 2025Updated 6 months ago