Alternatives and similar repositories for seqtime:

Users that are interested in seqtime are comparing it to the libraries listed below

• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆22Updated 2 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆47Updated 11 months ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last month
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last month
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆22Updated last year
• bacteria-archaea-traits / bacteria-archaea-traits
  A synthesis of bacterial and archaeal phenotypic trait data
  ☆33Updated last year
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• lch14forever / beem-static
  📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
  ☆9Updated 3 years ago
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 2 weeks ago
• ramellose / CoNetinR
  Implementation of CoNet in R
  ☆15Updated 5 years ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• barakbri / dacomp
  Non parametric differential abundance tests for microbiome data
  ☆9Updated 3 years ago
• statdivlab / radEmu
  ☆54Updated this week
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆51Updated 3 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated 10 months ago
• daisybio / namco
  ☆10Updated 2 weeks ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆49Updated last month
• Xiaoyu2425 / mEQO
  ☆15Updated 2 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆55Updated 6 months ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 9 years ago
• reptalex / phylofactor
  ☆26Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 2 months ago