nextgenusfs / amptk

Related projects: ⓘ

• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆30Updated last month
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated last year
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆45Updated 4 months ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last month
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆29Updated 3 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆46Updated last year
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆40Updated 3 months ago
• aomlomics / tourmaline
  Amplicon sequence processing workflow using QIIME 2 and Snakemake
  ☆42Updated this week
• MadsAlbertsen / ampvis
  [deprecated] Please use ampvis2
  ☆8Updated 6 years ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆17Updated 3 weeks ago
• knights-lab / BugBase
  ☆35Updated 6 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆42Updated 4 years ago
• edamame-course / Metagenome
  ☆23Updated 6 years ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆55Updated 2 weeks ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆51Updated 2 weeks ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 3 months ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆52Updated 3 weeks ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆50Updated 11 months ago
• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆19Updated last year
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆33Updated last year
• BikLab / BITMaB2-Tutorials
  Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…
  ☆21Updated 6 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆62Updated 8 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆28Updated last year
• WatsonLab / MAGpy
  Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
  ☆62Updated last year
• mahsa-mousavi / eDNAFlow
  ☆19Updated last year
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆21Updated this week
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆48Updated 4 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆18Updated last year
• vmaffei / dada2_to_picrust
  Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)
  ☆19Updated 5 years ago