microbiome / course_2021_radboudLinks
Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/
☆12Updated 3 years ago
Alternatives and similar repositories for course_2021_radboud
Users that are interested in course_2021_radboud are comparing it to the libraries listed below
Sorting:
- ☆55Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 weeks ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆42Updated 2 weeks ago
- functions for analyzing phyloseq data☆28Updated 4 months ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- ☆20Updated 5 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆37Updated last week
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 8 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12Updated 3 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A microbiome analysis toolkit for R☆23Updated last year
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆27Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆37Updated 3 weeks ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆86Updated last year
- Speedy versions of phyloseq functions☆47Updated last year
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Updated 8 years ago
- ☆12Updated 3 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆30Updated 2 years ago
- ☆16Updated this week
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month