An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
☆14Jul 22, 2025Updated last year
Alternatives and similar repositories for TreeSummarizedExperiment
Users that are interested in TreeSummarizedExperiment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- ☆15Aug 6, 2020Updated 6 years ago
- ☆14Aug 30, 2025Updated last year
- A container (S4 class) for matrix-like assays☆39Oct 1, 2026Updated last week
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, B…☆11Oct 1, 2021Updated 5 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆18Feb 26, 2018Updated 8 years ago
- Bioconductor package for management of multi-assay data☆76Aug 28, 2026Updated last month
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Microbiome analysis☆58Updated this week
- ☆14Feb 17, 2022Updated 4 years ago
- ☆22Feb 9, 2024Updated 2 years ago
- ☆21Apr 28, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a read-only mirror of the CRAN R package repository. mixOmics — Omics Data Integration Project. Homepage: http://www.mixOmics.o…☆10Jun 1, 2018Updated 8 years ago
- ☆10May 31, 2022Updated 4 years ago
- ☆65Mar 18, 2025Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23Sep 1, 2026Updated last month
- This repository contains HCA Benchmarking codes☆27Nov 11, 2019Updated 6 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 5 years ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 5 months ago
- ☆14Mar 18, 2022Updated 4 years ago
- pulsar: Parallel Utilities for Lambda Selection along a Regularization Path☆10Mar 28, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆12Feb 7, 2017Updated 9 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆28Nov 6, 2021Updated 4 years ago
- A workshop on microbiome analysis using Bioconductor☆16Jun 20, 2019Updated 7 years ago
- Clone of the Bioconductor repository for the basilisk package.☆29Nov 8, 2025Updated 11 months ago
- gkmSVM R package☆17Aug 31, 2026Updated last month
- Decorate a plot with associated information☆131Updated this week
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated 2 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single Cell multimodal data scripts for downloading datasets☆20May 20, 2026Updated 4 months ago
- R package for simulating and analyzing temporally autocorrelated populations.☆10Apr 11, 2024Updated 2 years ago
- Workshop 4 - Linear models☆15Sep 3, 2024Updated 2 years ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆231Jul 13, 2026Updated 2 months ago
- Digenome-toolkit ver2.☆15Nov 1, 2021Updated 4 years ago
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 6 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago