Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
☆16Jan 31, 2025Updated last year
Alternatives and similar repositories for GMPR
Users that are interested in GMPR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆13Aug 19, 2021Updated 5 years ago
- ☆14Dec 2, 2024Updated last year
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆11Apr 22, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 10 months ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- topological data analysis of population-scale microbiomes☆34Jan 27, 2023Updated 3 years ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 12 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 8 years ago
- Microbiome analysis☆58Updated this week
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- For anyone who wants to share and compare their microbiome data.☆28Jun 17, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆35Oct 19, 2020Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 3 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 7 years ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 5 years ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆31Mar 27, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Climate change is a controversial topic of debate, where many of us do not believe in anthropogenic climate change. Because its consequen…☆12Sep 20, 2022Updated 4 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 3 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 2 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆76Jul 27, 2026Updated 2 months ago
- Distributed dynamic process model (DDPM) is a bidirectional coupling eco-hydrological model for (but not limited to) steppe inland river …☆10Jul 9, 2025Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 4 years ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- agent based modelling☆39Aug 28, 2024Updated 2 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- ☆13Sep 1, 2020Updated 6 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- Fungal Validation and Identification Pipeline☆16Oct 1, 2026Updated last week
- Code, unit tests, and tutorials for running PICRUSt2☆396Sep 25, 2026Updated 2 weeks ago
- A model-based visualization method for microbiome data☆16Jul 17, 2026Updated 2 months ago