Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
β16Jan 31, 2025Updated last year
Alternatives and similar repositories for GMPR
Users that are interested in GMPR are comparing it to the libraries listed below
Sorting:
- π¦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra modelsβ10Aug 24, 2021Updated 4 years ago
- Annotate your metagenome assembliesβ11Jul 19, 2018Updated 7 years ago
- mbImpute: an accurate and robust imputation method for microbiome dataβ11Aug 19, 2021Updated 4 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matchesβ12Jul 19, 2023Updated 2 years ago
- β13Dec 2, 2024Updated last year
- Plot microbiome time series in parallelβ27Nov 7, 2023Updated 2 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.β13Nov 18, 2025Updated 4 months ago
- METAgenomic LONgitudinal Differential Abundance methodβ16Dec 17, 2019Updated 6 years ago
- The Microbiome Interpretable Temporal Rule Engineβ46May 26, 2021Updated 4 years ago
- topological data analysis of population-scale microbiomesβ32Jan 27, 2023Updated 3 years ago
- Tool to look for contaminants, with a kmer database.β15Jun 6, 2014Updated 11 years ago
- A succinct colored dBG representationβ12Sep 11, 2018Updated 7 years ago
- Microbiome analysisβ54Updated this week
- tidyMicro GitHup Repositoryβ21Nov 17, 2021Updated 4 years ago
- For anyone who wants to share and compare their microbiome data.β29Jun 17, 2016Updated 9 years ago
- Accurate metagenomi/metatranscriptomic analysis pipelineβ23Jun 28, 2021Updated 4 years ago
- R package to quickly obtain count vectors from indexed bam filesβ15Jun 13, 2025Updated 9 months ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check β¦β33Oct 19, 2020Updated 5 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamicsβ21Dec 9, 2022Updated 3 years ago
- dada2 formatted nifH databaseβ13May 17, 2024Updated last year
- Inference of putative transmission phylogenetic clustersβ12Oct 13, 2020Updated 5 years ago
- A model-based visualization method for microbiome dataβ16Oct 27, 2025Updated 4 months ago
- Detect contigs of complete circular genomesβ23Jun 6, 2019Updated 6 years ago
- Scotch pipeline for indel calling.β10Nov 25, 2019Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Nov 12, 2020Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Aug 22, 2023Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductorβ30May 1, 2025Updated 10 months ago
- MetagenOmic read Re-Assigner and abundance quantifierβ20Jan 31, 2025Updated last year
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.β10Apr 25, 2024Updated last year
- Scanning and visualization for variable gap motifs.β18Aug 6, 2024Updated last year
- Climate change is a controversial topic of debate, where many of us do not believe in anthropogenic climate change. Because its consequenβ¦β11Sep 20, 2022Updated 3 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).β12Oct 12, 2023Updated 2 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthologyβ10Jan 17, 2023Updated 3 years ago
- β13Sep 1, 2020Updated 5 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experimentsβ11Jul 9, 2020Updated 5 years ago
- agent based modellingβ35Aug 28, 2024Updated last year
- Download assembly files from NCBIβ13May 9, 2023Updated 2 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixtureβ12Sep 22, 2022Updated 3 years ago
- From annotated genomes to metabolic screening in large scale microbiotasβ69Jan 16, 2026Updated 2 months ago