jchen1981 / GMPRLinks
Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
☆16Updated last year
Alternatives and similar repositories for GMPR
Users that are interested in GMPR are comparing it to the libraries listed below
Sorting:
- Speedy versions of phyloseq functions☆48Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Updated 3 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- ☆13Updated 6 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- diversity estimation under ecological networks☆83Updated 6 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 4 years ago
- Tools for visualising microbial community amplicon data☆71Updated 3 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- ☆28Updated last year
- Linear Decomposition Model☆25Updated 2 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last month
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- selbal: selection of balances for microbial signatures☆32Updated 11 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 3 years ago
- ☆20Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Updated 4 years ago
- Implementation of CoNet in R☆16Updated 6 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- A microbiome analysis toolkit for R☆25Updated 2 years ago