Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
☆16Jan 31, 2025Updated last year
Alternatives and similar repositories for GMPR
Users that are interested in GMPR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 4 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆11Aug 19, 2021Updated 4 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- ☆13Dec 2, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 4 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 4 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- topological data analysis of population-scale microbiomes☆32Jan 27, 2023Updated 3 years ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 11 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- Microbiome analysis☆55Mar 26, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- For anyone who wants to share and compare their microbiome data.☆29Jun 17, 2016Updated 9 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆34Oct 19, 2020Updated 5 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Dec 9, 2022Updated 3 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- A model-based visualization method for microbiome data☆16Oct 27, 2025Updated 5 months ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Mar 27, 2026Updated 2 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Climate change is a controversial topic of debate, where many of us do not believe in anthropogenic climate change. Because its consequen…☆12Sep 20, 2022Updated 3 years ago
- Scanning and visualization for variable gap motifs.☆18Aug 6, 2024Updated last year
- Distributed dynamic process model (DDPM) is a bidirectional coupling eco-hydrological model for (but not limited to) steppe inland river …☆10Jul 9, 2025Updated 9 months ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Sep 1, 2020Updated 5 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 5 years ago
- agent based modelling☆35Aug 28, 2024Updated last year
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆71Mar 26, 2026Updated 2 weeks ago