Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data
β16Jan 31, 2025Updated last year
Alternatives and similar repositories for GMPR
Users that are interested in GMPR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π¦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra modelsβ10Aug 24, 2021Updated 4 years ago
- Annotate your metagenome assembliesβ11Jul 19, 2018Updated 8 years ago
- mbImpute: an accurate and robust imputation method for microbiome dataβ13Aug 19, 2021Updated 4 years ago
- β13Dec 2, 2024Updated last year
- Plot microbiome time series in parallelβ27Nov 7, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOnβ10Apr 22, 2021Updated 5 years ago
- METAgenomic LONgitudinal Differential Abundance methodβ16Dec 17, 2019Updated 6 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matchesβ13Jul 19, 2023Updated 3 years ago
- The Microbiome Interpretable Temporal Rule Engineβ46May 26, 2021Updated 5 years ago
- topological data analysis of population-scale microbiomesβ35Jan 27, 2023Updated 3 years ago
- Tool to look for contaminants, with a kmer database.β15Jun 6, 2014Updated 12 years ago
- A succinct colored dBG representationβ12Sep 11, 2018Updated 7 years ago
- Scotch pipeline for indel calling.β10Nov 25, 2019Updated 6 years ago
- Microbiome analysisβ58Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accurate metagenomi/metatranscriptomic analysis pipelineβ23Jun 28, 2021Updated 5 years ago
- For anyone who wants to share and compare their microbiome data.β28Jun 17, 2016Updated 10 years ago
- R package to quickly obtain count vectors from indexed bam filesβ15May 21, 2026Updated 2 months ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamicsβ20Dec 9, 2022Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β32Aug 22, 2023Updated 2 years ago
- dada2 formatted nifH databaseβ13May 17, 2024Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Nov 12, 2020Updated 5 years ago
- Inference of putative transmission phylogenetic clustersβ12Oct 13, 2020Updated 5 years ago
- Detect contigs of complete circular genomesβ23Jun 6, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Download assembly files from NCBIβ12May 9, 2023Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductorβ32Mar 27, 2026Updated 4 months ago
- Climate change is a controversial topic of debate, where many of us do not believe in anthropogenic climate change. Because its consequenβ¦β12Sep 20, 2022Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifierβ21Jun 24, 2026Updated last month
- Scanning and visualization for variable gap motifs.β18Aug 6, 2024Updated 2 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.β12Apr 25, 2024Updated 2 years ago
- From annotated genomes to metabolic screening in large scale microbiotasβ77Jul 27, 2026Updated 2 weeks ago
- Distributed dynamic process model (DDPM) is a bidirectional coupling eco-hydrological model for (but not limited to) steppe inland river β¦β10Jul 9, 2025Updated last year
- Batch effects removal for microbiome data via conditional quantile regressionβ33Aug 23, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Uncover organisms' metabolic blueprintsβ18Jun 18, 2024Updated 2 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experimentsβ11Jul 9, 2020Updated 6 years ago
- agent based modellingβ39Aug 28, 2024Updated last year
- FASSO: Functional Annotations using Sequence and Structure Orthologyβ10Jan 17, 2023Updated 3 years ago
- β13Sep 1, 2020Updated 5 years ago
- Analysis framework for integrating gut microbiome and host gene expression dataβ36Apr 25, 2022Updated 4 years ago
- Fungal Validation and Identification Pipeline