bokulich-lab / RESCRIPtLinks
REference Sequence annotation and CuRatIon Pipeline
☆97Updated last week
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below
Sorting:
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 4 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 2 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆87Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆119Updated this week
- Making whole bacterial genome sequencing data analysis easy☆110Updated 4 months ago
- Bioinformatics program inStrain☆174Updated 4 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- ☆77Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆45Updated 3 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆161Updated 2 weeks ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆70Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- A toolbox for comparative genomics.☆103Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago
- ☆83Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆91Updated 2 weeks ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year