REference Sequence annotation and CuRatIon Pipeline
☆99Feb 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below
Sorting:
- motus - a tool for marker gene-based OTU (mOTU) profiling☆170Dec 11, 2025Updated 2 months ago
- Import qiime2 artifacts to R☆176Dec 12, 2024Updated last year
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated last month
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Apr 4, 2025Updated 11 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆19Feb 20, 2026Updated last week
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆10Sep 1, 2020Updated 5 years ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 7 months ago
- A complete pipeline for metagenomic analysis☆440Updated this week
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- QIIME 2 plugin supporting taxonomic classification☆21Jan 27, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆460Jul 28, 2023Updated 2 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 3 months ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆381Nov 27, 2025Updated 3 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆229Oct 29, 2025Updated 4 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Oct 26, 2020Updated 5 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆143Dec 17, 2025Updated 2 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16May 26, 2025Updated 9 months ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 8 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆14Jun 12, 2023Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆129Oct 20, 2025Updated 4 months ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆696Oct 28, 2025Updated 4 months ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆119Jan 8, 2026Updated last month
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆222Feb 18, 2026Updated 2 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Feb 26, 2026Updated last week
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆525Feb 25, 2026Updated last week
- Versatile open-source tool for microbiome analysis☆738Feb 24, 2026Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆367Aug 1, 2025Updated 7 months ago
- Orchestrating Microbiome Analysis☆107Feb 16, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- R package for microbiome biomarker discovery☆193Feb 19, 2025Updated last year