REference Sequence annotation and CuRatIon Pipeline
☆101Jun 3, 2026Updated last month
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 5 months ago
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆177Jun 16, 2026Updated 2 weeks ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆73Dec 21, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 11 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- QIIME 2 plugin supporting taxonomic classification☆20Jun 9, 2026Updated 3 weeks ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆130Jan 8, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Distance denoise by Entropy☆15Oct 17, 2025Updated 8 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆527Updated this week
- creating reference databases for amplicon sequencing☆51Jan 13, 2026Updated 5 months ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆138Apr 22, 2026Updated 2 months ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆23Apr 13, 2026Updated 2 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated last month
- Code, unit tests, and tutorials for running PICRUSt2☆391Nov 27, 2025Updated 7 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆151Dec 17, 2025Updated 6 months ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- A complete pipeline for metagenomic analysis☆446Updated this week
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆19Jun 22, 2026Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- Orchestrating Microbiome Analysis☆109Jun 22, 2026Updated last week
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 8 months ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated last year
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆232Apr 29, 2026Updated 2 months ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year