REference Sequence annotation and CuRatIon Pipeline
☆99May 19, 2026Updated this week
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 4 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173Updated this week
- Import qiime2 artifacts to R☆180Dec 12, 2024Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 10 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆18May 26, 2025Updated 11 months ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Apr 4, 2025Updated last year
- QIIME 2 plugin supporting taxonomic classification☆20May 11, 2026Updated last week
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆131Jan 8, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Distance denoise by Entropy☆15Oct 17, 2025Updated 7 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆471Jul 28, 2023Updated 2 years ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆528Updated this week
- creating reference databases for amplicon sequencing☆50Jan 13, 2026Updated 4 months ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆134Apr 22, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆23Apr 13, 2026Updated last month
- ATLAS - Three commands to start analyzing your metagenome data☆405Nov 28, 2025Updated 5 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆388Nov 27, 2025Updated 5 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆149Dec 17, 2025Updated 5 months ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated last week
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆19May 13, 2026Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- Orchestrating Microbiome Analysis☆108May 7, 2026Updated 2 weeks ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆713Oct 28, 2025Updated 6 months ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆55Aug 4, 2024Updated last year
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆231Apr 29, 2026Updated 3 weeks ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year