bokulich-lab / RESCRIPtLinks
REference Sequence annotation and CuRatIon Pipeline
☆97Updated last week
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below
Sorting:
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 5 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 3 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated 2 weeks ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Best-fit model selection☆83Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆143Updated last month
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated last week
- (Meta-)genome screening for functional and natural product gene sequences☆91Updated 2 weeks ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆141Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- ☆83Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Development version of Easyfig☆100Updated last year
- ☆78Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆162Updated last month