REference Sequence annotation and CuRatIon Pipeline
☆103Oct 22, 2026Updated last week
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆188Jul 17, 2026Updated 3 months ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 9 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆76Dec 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Oct 22, 2026Updated last week
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago
- A complete pipeline for metagenomic analysis☆456Aug 28, 2026Updated 2 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆481Oct 9, 2026Updated 3 weeks ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆533Updated this week
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆32May 25, 2021Updated 5 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 4 years ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated last year
- Code, unit tests, and tutorials for running PICRUSt2☆399Oct 24, 2026Updated last week
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆35Oct 1, 2024Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆141Aug 6, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 6 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 6 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆156Oct 15, 2026Updated 2 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated 2 years ago
- Distance denoise by Entropy☆16Oct 17, 2025Updated last year
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 5 months ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 6 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- Rapid comparison and dereplication of genomes☆360Oct 9, 2026Updated 3 weeks ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆102Jul 12, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆411Updated this week