REference Sequence annotation and CuRatIon Pipeline
☆101Jul 14, 2026Updated last week
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 6 months ago
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆73Dec 21, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated last week
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated last year
- Distance denoise by Entropy☆16Oct 17, 2025Updated 9 months ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- QIIME 2 plugin supporting taxonomic classification☆20Updated this week
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 6 months ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆528Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆474Jul 28, 2023Updated 2 years ago
- ☆19Jun 22, 2026Updated last month
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆84Jun 25, 2026Updated 3 weeks ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆139Jul 8, 2026Updated 2 weeks ago
- Code, unit tests, and tutorials for running PICRUSt2☆394Nov 27, 2025Updated 7 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆406May 28, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆152Jul 11, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆271Mar 20, 2025Updated last year
- A complete pipeline for metagenomic analysis☆451Jul 11, 2026Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated last year
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Mar 21, 2026Updated 4 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆554Feb 13, 2026Updated 5 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆233Apr 29, 2026Updated 2 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 8 months ago
- Orchestrating Microbiome Analysis☆109Jul 10, 2026Updated 2 weeks ago