REference Sequence annotation and CuRatIon Pipeline
☆101Jul 21, 2026Updated 3 weeks ago
Alternatives and similar repositories for RESCRIPt
Users that are interested in RESCRIPt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 6 months ago
- Import qiime2 artifacts to R☆184Dec 12, 2024Updated last year
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆75Dec 21, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Jul 21, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated 3 weeks ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated last year
- Distance denoise by Entropy☆16Oct 17, 2025Updated 9 months ago
- 将速铂下载工具进行封装,以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- QIIME 2 plugin supporting taxonomic classification☆20Aug 6, 2026Updated last week
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆130Jan 8, 2026Updated 7 months ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆529Aug 3, 2026Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆475Jul 28, 2023Updated 3 years ago
- ☆20Jun 22, 2026Updated last month
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆85Jun 25, 2026Updated last month
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆140Aug 6, 2026Updated last week
- Code, unit tests, and tutorials for running PICRUSt2☆396Nov 27, 2025Updated 8 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆406May 28, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- Various functions for analysis of microbial community data