Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
☆128May 12, 2024Updated 2 years ago
Alternatives and similar repositories for MicrobiomeBestPracticeReview
Users that are interested in MicrobiomeBestPracticeReview are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- A complete pipeline for metagenomic analysis☆451Jul 11, 2026Updated last week
- microbiome R package☆318May 12, 2026Updated 2 months ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- microbiome data simulation package☆22Oct 2, 2025Updated 9 months ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- ☆12Dec 22, 2025Updated 7 months ago
- Course material for the metagenomics course☆47Mar 2, 2022Updated 4 years ago
- A comprehensive R package for deep mining microbiome☆195Apr 29, 2026Updated 2 months ago
- ☆43Jul 31, 2017Updated 8 years ago
- Read alignment statistics for metagenomics☆400Jul 10, 2026Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- A companion R package for the MicrobiomeAnalyst web server☆133Updated this week
- Orchestrating Microbiome Analysis☆109Jul 10, 2026Updated last week
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 5 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆233Apr 29, 2026Updated 2 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆254Jul 16, 2026Updated last week
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package for downstream data analysis of microbiome omics data☆285Jul 11, 2026Updated last week
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated last month
- bioBakery tools for meta'omic profiling☆321Updated this week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 6 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models