Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
☆125May 12, 2024Updated last year
Alternatives and similar repositories for MicrobiomeBestPracticeReview
Users that are interested in MicrobiomeBestPracticeReview are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- A complete pipeline for metagenomic analysis☆440Mar 11, 2026Updated last week
- R package for microbiome biomarker discovery☆194Feb 19, 2025Updated last year
- microbiome R package☆314Aug 19, 2025Updated 7 months ago
- microbiome data simulation package☆22Oct 2, 2025Updated 5 months ago
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 6 months ago
- A comprehensive R package for deep mining microbiome☆191Nov 3, 2025Updated 4 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- ☆43Jul 31, 2017Updated 8 years ago
- Read alignment statistics for metagenomics☆392Mar 16, 2026Updated last week
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- A companion R package for the MicrobiomeAnalyst web server☆131Mar 7, 2026Updated 2 weeks ago
- Orchestrating Microbiome Analysis☆107Mar 15, 2026Updated last week
- Course material for the metagenomics course☆47Mar 2, 2022Updated 4 years ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆55Aug 4, 2024Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆458Feb 13, 2026Updated last month
- ☆10Dec 22, 2025Updated 3 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆238Updated this week
- Statistics and visualization for amplicon data☆73Apr 25, 2023Updated 2 years ago
- An R package for downstream data analysis of microbiome omics data☆272Updated this week
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Feb 27, 2026Updated 3 weeks ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆230Oct 29, 2025Updated 4 months ago
- bioBakery tools for meta'omic profiling☆309Jun 3, 2025Updated 9 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆152Feb 5, 2026Updated last month
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 4 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆222Feb 18, 2026Updated last month
- zDB: comparative bacterial genomics made easy☆40Feb 2, 2026Updated last month
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jun 24, 2024Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Microbiome analysis☆54Mar 16, 2026Updated last week