Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
☆129May 12, 2024Updated 2 years ago
Alternatives and similar repositories for MicrobiomeBestPracticeReview
Users that are interested in MicrobiomeBestPracticeReview are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A complete pipeline for metagenomic analysis☆456Aug 28, 2026Updated 2 months ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆411Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated last year
- microbiome R package☆320Oct 24, 2026Updated last week
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Microbiome research☆22May 24, 2022Updated 4 years ago
- Orchestrating Microbiome Analysis☆112Oct 23, 2026Updated last week
- A comprehensive R package for deep mining microbiome☆197Apr 29, 2026Updated 6 months ago
- Download refseq-genomic data and prepare it for Kraken☆11Jan 20, 2017Updated 9 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- An R package for downstream data analysis of microbiome omics data☆295Oct 20, 2026Updated last week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆264Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆481Oct 9, 2026Updated 3 weeks ago
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- microbiome data simulation package☆22Oct 2, 2025Updated last year
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆467Feb 13, 2026Updated 8 months ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 4 years ago
- ☆42Jul 31, 2017Updated 9 years ago
- bioBakery tools for meta'omic profiling☆326Aug 4, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week
- ☆12Dec 22, 2025Updated 10 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 3 weeks ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆156Oct 15, 2026Updated 2 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Course material for the metagenomics course☆44Mar 2, 2022Updated 4 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆234Jul 16, 2026Updated 3 months ago
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆16Jun 26, 2026Updated 4 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Oct 25, 2026Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆188Jul 17, 2026Updated 3 months ago