Microbiome Analysis Plotting and Visualization
☆12Mar 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for miaViz
Users that are interested in miaViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 4 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated 6 months ago
- Microbiome analysis☆55Mar 26, 2026Updated 2 weeks ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Nov 10, 2022Updated 3 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated 2 months ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- A shiny package for microbiome functional enrichment analysis☆39Dec 23, 2025Updated 3 months ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆41Apr 8, 2024Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- ☆25Apr 7, 2026Updated last week
- An R package containing the functions for the Open Bodem Index (OBI)☆14Mar 24, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- Orchestrating Microbiome Analysis☆108Mar 26, 2026Updated 2 weeks ago
- a simple variational auto encoder with some exploration☆12Nov 22, 2024Updated last year
- Nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection☆11Mar 17, 2019Updated 7 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- ☆12Nov 21, 2018Updated 7 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Feb 7, 2017Updated 9 years ago
- A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.☆11Jan 2, 2019Updated 7 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- R package for simulating and analyzing temporally autocorrelated populations.☆10Apr 11, 2024Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated this week
- ☆26Jan 29, 2026Updated 2 months ago
- Abnorm is a django denormalization toolkit☆13Jun 11, 2024Updated last year
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆29Jul 21, 2022Updated 3 years ago
- This is an R package for element cycle analysis using metagenomic data.☆43Feb 2, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆78Oct 16, 2024Updated last year
- ☆11Apr 17, 2025Updated 11 months ago
- Extending the Orchard Plot for Meta-analysis☆20Jan 29, 2026Updated 2 months ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- ☆10Mar 24, 2025Updated last year
- MGnify RESTful API☆10Updated this week
- ☆13Feb 5, 2022Updated 4 years ago