Microbiome Analysis Plotting and Visualization
☆12Nov 9, 2026Updated this week
Alternatives and similar repositories for miaViz
Users that are interested in miaViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- microbiome data simulation package☆22Oct 2, 2025Updated last year
- Microbiome analysis☆60Updated this week
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 5 years ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Nov 7, 2026Updated last week
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆29Mar 8, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- an R package to biotype a community☆14Oct 19, 2021Updated 5 years ago
- USDA Nutrition codes Tree☆12Feb 13, 2020Updated 6 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Nov 10, 2022Updated 4 years ago
- METAgenomic LONgitudinal Differential Abundance method☆15Dec 17, 2019Updated 6 years ago
- microntology: a lightweight, data-driven controlled vocabulary to describe Earth's microbial habitats.☆12Oct 14, 2026Updated last month
- Orchestrating Microbiome Analysis☆114Updated this week
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- MintTea: A pipeline for identifying multi-omic disease associated modules in microbiome data☆10Apr 26, 2025Updated last year
- A shiny package for microbiome functional enrichment analysis☆42Nov 1, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An R package containing the functions for the Open Bodem Index (OBI)☆17Nov 3, 2026Updated last week
- R package to perform calculations on data produced from quantitative stable isotope probing (qSIP) experiments☆10Oct 14, 2025Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆41Apr 8, 2024Updated 2 years ago
- ☆30Nov 3, 2026Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Integrated Machine Learning for Multi-omics Classification and Prediction☆34Updated this week
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genepanel.iobio: generate list of genes based on suspected conditions and phenotypes.☆11Oct 7, 2025Updated last year
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- JupyterBook for QIIME 2 FAES January 2022 workshop☆12Mar 19, 2025Updated last year
- R package for simulating and analyzing temporally autocorrelated populations.☆10Oct 28, 2026Updated 2 weeks ago
- The Surface Assessment via Grid Evaluation (SuAVE) software was developed to account for the effect of curvature in the calculations of s…☆12Jun 7, 2026Updated 5 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 11 months ago
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆11Oct 14, 2026Updated last month
- ☆11Apr 17, 2025Updated last year
- Comparative genomics pipeline☆11May 20, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Microbiome Based Sum of Powered Score (MiSPU) Tests☆10Mar 17, 2018Updated 8 years ago
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 6 years ago
- FAstqc DAta PArser - A minimal parser to parse FastQC output data.☆16Apr 9, 2016Updated 10 years ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 4 years ago
- ☆12Nov 21, 2018Updated 7 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
Are these results useful?