Alternatives and similar repositories for miaSim:

Users that are interested in miaSim are comparing it to the libraries listed below

• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆27Updated 2 months ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆39Updated 5 months ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆17Updated 6 months ago
• EBI-Metagenomics / MGnifyR
  R package for searching, downloading and analysis of EBI MGnify metagenomics data
  ☆21Updated this week
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆27Updated last year
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• AroneyS / binchicken
  Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
  ☆40Updated last week
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 6 months ago
• statdivlab / radEmu
  ☆54Updated 3 weeks ago
• Xiaoyu2425 / mEQO
  ☆15Updated 2 years ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆22Updated last year
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated 3 weeks ago
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆23Updated 2 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 3 months ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆18Updated 2 months ago
• Shenhav-and-Korem-labs / SCRuB
  ☆29Updated 3 months ago
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆24Updated 5 months ago
• larssnip / micropan
  R package for microbial pangenomics
  ☆23Updated 3 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆51Updated 5 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆57Updated 7 months ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 9 months ago
• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆20Updated 3 weeks ago
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago