microbiome data simulation package
☆22Oct 2, 2025Updated 6 months ago
Alternatives and similar repositories for miaSim
Users that are interested in miaSim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome Analysis Plotting and Visualization☆12Mar 23, 2026Updated 2 weeks ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated last month
- ☆10Jul 4, 2019Updated 6 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆18Mar 18, 2025Updated last year
- ☆35Jan 21, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- Microbiome analysis☆55Mar 26, 2026Updated 2 weeks ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆21Dec 9, 2022Updated 3 years ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆13Nov 20, 2025Updated 4 months ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- ☆21Mar 15, 2023Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- Compositional Lotka-Volterra☆16May 31, 2024Updated last year
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 12, 2024Updated last year
- ☆17May 13, 2025Updated 10 months ago
- ☆64Mar 13, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆125May 12, 2024Updated last year
- For distributing patric related code☆27Dec 19, 2022Updated 3 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Nov 10, 2022Updated 3 years ago
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 4 years ago
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- Convert GTDB taxonomy to NCBI taxdump format☆74Aug 24, 2023Updated 2 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- Convert bioinformatics files to an emoji format.☆24Jul 15, 2023Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆27Mar 8, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆246Oct 12, 2025Updated 5 months ago
- ☆16May 22, 2023Updated 2 years ago