KasperSkytte / ampvis2
Tools for visualising microbial community amplicon data
☆67Updated 2 weeks ago
Alternatives and similar repositories for ampvis2:
Users that are interested in ampvis2 are comparing it to the libraries listed below
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- diversity estimation under ecological networks☆83Updated 2 weeks ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 11 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- functions for analyzing phyloseq data☆27Updated 3 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 4 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated this week
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- ☆23Updated 6 years ago
- Genome wide orthology inference and dNdS estimation☆90Updated last year
- R implementation of the LEfSe method☆58Updated 2 weeks ago
- ☆74Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 9 months ago