Miscellaneous functions for metagenomic analysis.
☆53Feb 20, 2026Updated last week
Alternatives and similar repositories for metagMisc
Users that are interested in metagMisc are comparing it to the libraries listed below
Sorting:
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated last month
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 4 months ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆19Feb 20, 2026Updated last week
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Metagenomics calibration R package☆20Feb 15, 2022Updated 4 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Mar 6, 2024Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Phylogenetic Isometric Log Ratio☆19Oct 15, 2024Updated last year
- Species richness with high diversity☆68Aug 5, 2025Updated 6 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆98Jul 12, 2024Updated last year
- A model-based visualization method for microbiome data☆16Oct 27, 2025Updated 4 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆229Oct 29, 2025Updated 4 months ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Dec 10, 2021Updated 4 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Sep 4, 2025Updated 5 months ago
- Import qiime2 artifacts to R☆176Dec 12, 2024Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- microbiome R package☆313Aug 19, 2025Updated 6 months ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Various functions for analysis of microbial community data☆47Oct 1, 2025Updated 5 months ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- A complete pipeline for metagenomic analysis☆441Jan 21, 2026Updated last month
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated this week
- A robust and fast clustering method for amplicon-based studies☆31Mar 23, 2023Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆48Nov 6, 2025Updated 3 months ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago