Miscellaneous functions for metagenomic analysis.
☆54May 14, 2026Updated last week
Alternatives and similar repositories for metagMisc
Users that are interested in metagMisc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 3 months ago
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 6 months ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Metagenomics calibration R package☆20Feb 15, 2022Updated 4 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆23Dec 10, 2021Updated 4 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Mar 23, 2026Updated last month
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆99Jul 12, 2024Updated last year
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A model-based visualization method for microbiome data☆16Oct 27, 2025Updated 6 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Mar 6, 2024Updated 2 years ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated last month
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 8 months ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆649Feb 27, 2026Updated 2 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆231Apr 29, 2026Updated 3 weeks ago
- Species richness with high diversity☆68Apr 20, 2026Updated last month
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- microbiome R package☆316May 12, 2026Updated last week
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆127May 4, 2026Updated 2 weeks ago
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated last week
- A dynamic database of fungal trait measurements☆86Feb 26, 2020Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated last month
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 7 years ago