gerberlab / mitreLinks
The Microbiome Interpretable Temporal Rule Engine
☆46Updated 4 years ago
Alternatives and similar repositories for mitre
Users that are interested in mitre are comparing it to the libraries listed below
Sorting:
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- ☆17Updated last year
- ☆28Updated last year
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- compositional data analysis toolbox☆60Updated 2 years ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Updated 2 weeks ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Basic Sequence Taxonomy Annotator☆43Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- ☆67Updated 9 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Updated 9 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 months ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- ☆35Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 6 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- map Illumina metagenomes to genomes!☆38Updated last week
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago