gerberlab / mitreLinks
The Microbiome Interpretable Temporal Rule Engine
☆46Updated 4 years ago
Alternatives and similar repositories for mitre
Users that are interested in mitre are comparing it to the libraries listed below
Sorting:
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆84Updated last month
- MicrobeDirectory 2.0☆22Updated 5 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- compositional data analysis toolbox☆60Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Basic Sequence Taxonomy Annotator☆44Updated last year
- ☆67Updated 9 years ago
- ☆17Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- map Illumina metagenomes to genomes!☆38Updated this week
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- ☆43Updated 8 years ago
- ☆12Updated 2 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- ☆28Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- R shiny app for interactive microbiome analysis☆56Updated 6 months ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Updated 9 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago