EBI-Metagenomics / MGnifyR
R package for searching, downloading and analysis of EBI MGnify metagenomics data
☆19Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for MGnifyR
- gutSMASH☆52Updated last month
- microbiome data simulation package☆18Updated last month
- ☆17Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- ☆50Updated 3 weeks ago
- functions for analyzing phyloseq data☆26Updated 3 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- Working with the outputs of sourmash in R☆25Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆23Updated 3 weeks ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Plot microbiome time series in parallel☆24Updated last year
- ☆57Updated this week
- ☆29Updated 8 months ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆52Updated 2 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆37Updated 7 months ago
- ☆35Updated 2 weeks ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆45Updated 8 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆17Updated 2 years ago
- Pipelines used in the lab.☆11Updated last month
- Speedy versions of phyloseq functions☆46Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last month
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 weeks ago
- A microbiome analysis toolkit for R☆21Updated last year
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆38Updated this week
- ☆21Updated 4 years ago