Alternatives and similar repositories for MGnifyR

Users that are interested in MGnifyR are comparing it to the libraries listed below

• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆67Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 3 months ago
• statdivlab / radEmu
  ☆62Updated last month
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆73Updated 5 months ago
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆40Updated 2 months ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆27Updated 2 years ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆41Updated 4 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆39Updated last year
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆28Updated 2 weeks ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆50Updated last week
• EBI-Metagenomics / mettannotator
  ☆81Updated 2 months ago
• a-h-b / dadasnake
  Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
  ☆50Updated last year
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆22Updated 2 years ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)
  ☆30Updated last week
• soedinglab / transannot
  TransAnnot - a fast transcriptome annotation pipeline
  ☆20Updated last year
• shandley / awesome-virome
  A listing of software, tools and databases useful for virome analysis
  ☆59Updated last week
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 5 years ago
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated 4 months ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆25Updated 5 months ago
• kelwyres / Bactabolize
  ☆43Updated 7 months ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆17Updated 3 years ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated 2 years ago
• functional-dark-side / agnostos-wf
  ☆45Updated 2 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 11 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆41Updated 2 months ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆78Updated 6 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆71Updated 3 weeks ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆22Updated 6 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆71Updated last month