Alternatives and similar repositories for MGnifyR

Users that are interested in MGnifyR are comparing it to the libraries listed below

• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 2 months ago
• EBI-Metagenomics / mettannotator
  ☆81Updated 3 weeks ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆27Updated 2 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆66Updated last year
• kelwyres / Bactabolize
  ☆42Updated 6 months ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆22Updated 2 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆93Updated 2 months ago
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆40Updated last month
• functional-dark-side / agnostos-wf
  ☆45Updated 2 years ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 5 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 6 months ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆48Updated last week
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆38Updated last year
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆72Updated 4 months ago
• biocore / q2-greengenes2
  A QIIME 2 plugin for interaction with the Greengenes2 database
  ☆33Updated last year
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆70Updated 3 weeks ago
• kevinmcgregor / mdine
  ☆12Updated 4 years ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆39Updated 2 months ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆22Updated 6 years ago
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆88Updated 3 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆36Updated 3 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 3 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆67Updated 2 weeks ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆97Updated this week
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 4 months ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 9 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated last week
• shandley / awesome-virome
  A listing of software, tools and databases useful for virome analysis
  ☆58Updated last week
• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆90Updated 2 months ago