EBI-Metagenomics / MGnifyRLinks
R package for searching, downloading and analysis of EBI MGnify metagenomics data
☆22Updated 5 months ago
Alternatives and similar repositories for MGnifyR
Users that are interested in MGnifyR are comparing it to the libraries listed below
Sorting:
- gutSMASH☆55Updated last week
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆65Updated last year
- (Meta-)genome screening for functional and natural product gene sequences☆92Updated last week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- ☆17Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated last week
- ☆55Updated last month
- ☆78Updated this week
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 2 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- microbiome data simulation package☆22Updated last week
- Vanilla regression methods for microbiome differential abundance analysis☆59Updated 4 years ago
- Plot microbiome time series in parallel☆26Updated last year
- An R package designed for drawing gene arrow maps☆90Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆75Updated last month
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- ☆40Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 months ago
- ☆45Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- functions for analyzing phyloseq data☆28Updated 8 months ago