robotoD / GenoViLinks
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
☆98Updated 2 years ago
Alternatives and similar repositories for GenoVi
Users that are interested in GenoVi are comparing it to the libraries listed below
Sorting:
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 5 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆73Updated 5 months ago
- ☆79Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated 2 months ago
- Reorients assembled microbial sequences☆128Updated 2 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆97Updated 2 weeks ago
- Bioinformatics tool for Locus Visualisation☆125Updated 5 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆81Updated 10 months ago
- ☆62Updated last year
- Prediction of prophages from bacterial genomes☆81Updated 4 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆78Updated last month
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆78Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆78Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆68Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆91Updated 5 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated last week
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 2 months ago
- IS mapping software☆56Updated 3 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago