robotoD / GenoViLinks
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
☆95Updated 2 years ago
Alternatives and similar repositories for GenoVi
Users that are interested in GenoVi are comparing it to the libraries listed below
Sorting:
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated last month
- Reorients assembled microbial sequences☆121Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated 2 months ago
- ☆72Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- Bioinformatics tool for Locus Visualisation☆106Updated last month
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆73Updated 5 months ago
- Supporting code for uncultivated gut virus manuscript☆72Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 10 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Local version of the virus identification and analysis web server (tool set)☆61Updated this week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- ARG normalization by mapping to the ARO ontology.☆57Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 10 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 2 months ago
- ☆137Updated last year
- Prediction of prophages from bacterial genomes☆78Updated 2 weeks ago