erinyoung / roundaboutLinks
Finding regions of similarity between plasmids
☆16Updated 3 years ago
Alternatives and similar repositories for roundabout
Users that are interested in roundabout are comparing it to the libraries listed below
Sorting:
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Updated 2 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 4 months ago
- ☆14Updated 4 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- ☆10Updated 6 months ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated 11 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- Generate basic stats for an assembly.☆13Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆15Updated 3 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Targeted Detection and Reconstruction of Plasmids☆21Updated last year
- ☆24Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated 3 weeks ago