Alternatives and similar repositories for roundabout

Users that are interested in roundabout are comparing it to the libraries listed below

• janka2012 / digIS
  Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes
  ☆10Updated 4 years ago
• stjacqrm / centroid
  tool to determine optimal refrerence genome given a set of fasta files
  ☆15Updated 2 years ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 5 months ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 2 years ago
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆15Updated 4 years ago
• mbhall88 / tbpore
  Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
  ☆11Updated last year
• katholt / reddog-nf
  pipeline for read mapping, snp calling and annotation for bacterial genomes
  ☆12Updated last year
• klebgenomics / Kleborate-viz
  Visualisation application for Klebsiella genotypes generated by Kleborate.
  ☆9Updated 4 years ago
• katholt / AMRrules
  Organism-specific interpretation of AMR genotypes
  ☆13Updated last year
• oschwengers / tadrep
  Targeted Detection and Reconstruction of Plasmids
  ☆20Updated last year
• rpetit3 / pasty
  A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
  ☆12Updated 10 months ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• chg60 / phammseqs
  Assort phage protein sequences into phamilies using MMseqs2
  ☆10Updated 6 months ago
• mbhall88 / classification_benchmark
  Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
  ☆12Updated last year
• CFIA-NCFAD / wgscovplot
  The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…
  ☆19Updated last year
• LanLab / ShigEiFinder
  Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
  ☆11Updated last year
• cchauve / HyAsP
  Hybrid Assembler for Plasmids
  ☆10Updated 2 years ago
• rrwick / Are-reads-required
  ☆10Updated 2 weeks ago
• rpetit3 / assembly-scan
  Generate basic stats for an assembly.
  ☆12Updated 2 years ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated last month
• farhat-lab / fast-lineage-caller
  ☆14Updated 3 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆24Updated 11 months ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆19Updated 2 years ago
• centre-pathogen-genomics / snippy-ng
  ☆20Updated 3 weeks ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆14Updated last month
• NorwegianVeterinaryInstitute / ALPPACA
  A tooL for Prokaryotic Phylogeny And Clustering Analysis
  ☆11Updated 4 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆57Updated 2 months ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆23Updated 2 years ago
• ctb / 2025-ncbi-rest-api
  Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t
  ☆12Updated 4 months ago
• maurijlozano / ISCompare
  ISCompare, an opensource program to identify Differentially Located Insertion Sequences
  ☆13Updated 10 months ago