Finding regions of similarity between plasmids
☆17Nov 2, 2022Updated 3 years ago
Alternatives and similar repositories for roundabout
Users that are interested in roundabout are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13Updated this week
- zDB: comparative bacterial genomics made easy☆40May 6, 2026Updated 2 weeks ago
- Organism-specific interpretation of AMR genotypes☆16Mar 17, 2026Updated 2 months ago
- ☆15Feb 10, 2025Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆65Jan 22, 2026Updated 4 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54May 10, 2026Updated 2 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆19Mar 25, 2026Updated 2 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 3 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 3 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 4 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated last week
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genome size estimation from long read overlaps☆89May 1, 2026Updated 3 weeks ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 3 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆83May 3, 2025Updated last year
- Python Toolkit for using containerized programs in either Singularity or Docker☆29Mar 19, 2024Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Apr 20, 2023Updated 3 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- whole genome MLST analysis☆53Mar 27, 2026Updated last month
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆93May 3, 2025Updated last year
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 2 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆66Apr 30, 2026Updated 3 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- IS mapping software☆58Dec 3, 2021Updated 4 years ago
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year