HubertTang / PLASMeLinks
☆30Updated last year
Alternatives and similar repositories for PLASMe
Users that are interested in PLASMe are comparing it to the libraries listed below
Sorting:
- ☆62Updated last year
- ☆54Updated 4 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆81Updated 10 months ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- ☆59Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆80Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated last month
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 6 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 8 months ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated 2 years ago
- whole genome MLST analysis☆49Updated 5 months ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆74Updated 6 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- ☆79Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- ☆50Updated last month
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago