ericcombiolab / DeepurifyLinks
☆11Updated 8 months ago
Alternatives and similar repositories for Deepurify
Users that are interested in Deepurify are comparing it to the libraries listed below
Sorting:
- The binning tool with dynamic contrastive learning and deep language model☆21Updated 2 months ago
- The viral taxonomic assignment pipeline☆42Updated last month
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 8 months ago
- ☆17Updated 2 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Updated 2 years ago
- Virus Identification☆25Updated 8 months ago
- ☆14Updated 4 years ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆24Updated 3 years ago
- Repository for general metagenomics Nextflow pipeline☆24Updated last week
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Updated 3 weeks ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Updated 2 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- Build a map of genes present across a set of microbial genomes☆18Updated 2 weeks ago
- Run_dbcan V5☆40Updated this week
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- ☆66Updated last year
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- ☆18Updated 4 years ago
- ☆18Updated 3 months ago
- ☆62Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated last year
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆28Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Updated 3 months ago
- ☆39Updated 2 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- Associated code for EvoWeaver publication☆16Updated 8 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- ☆36Updated last month