Alternatives and similar repositories for Deepurify

Users that are interested in Deepurify are comparing it to the libraries listed below

• zoubohao / CompleteBin
  The binning tool with dynamic contrastive learning and deep language model
  ☆21Updated last month
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆41Updated 3 weeks ago
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆23Updated 6 months ago
• ChengPENG-wolf / ViraLM
  Virus Identification
  ☆25Updated 6 months ago
• dyxstat / ViralCC
  ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes
  ☆17Updated last month
• CAMI-challenge / second_challenge_evaluation
  Repository for codes, analyses and visualizations for the CAMI II challenges
  ☆14Updated 2 years ago
• gene2dis / BugBuster
  Repository for general metagenomics Nextflow pipeline
  ☆24Updated 2 weeks ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Updated last year
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆22Updated 10 months ago
• ziyewang / COMEBin
  ☆63Updated last year
• ziyewang / MetaBinner
  ☆61Updated last year
• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆37Updated last month
• edzuf / CrisprOpenDB
  ☆18Updated 4 years ago
• KennthShang / PhaGCN2.0
  ☆35Updated 5 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆77Updated 3 years ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated last year
• FredHutch / gig-map
  Build a map of genes present across a set of microbial genomes
  ☆18Updated last week
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆85Updated 2 weeks ago
• bcb-unl / run_dbcan
  Run_dbcan V5
  ☆33Updated last month
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated 2 years ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆60Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆40Updated 3 years ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆67Updated last year
• HubertTang / PLASMe
  ☆31Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated 3 weeks ago
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆75Updated last week
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆21Updated last week
• BGI-Qingdao / GOMC
  ☆17Updated last year
• ravel-lab / VIRGO
  ☆15Updated 3 years ago