ericcombiolab / DeepurifyLinks
☆11Updated 7 months ago
Alternatives and similar repositories for Deepurify
Users that are interested in Deepurify are comparing it to the libraries listed below
Sorting:
- The binning tool with dynamic contrastive learning and deep language model☆21Updated 2 months ago
- The viral taxonomic assignment pipeline☆42Updated 3 weeks ago
- ☆17Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 7 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 2 weeks ago
- ☆35Updated 6 months ago
- Virus Identification☆25Updated 7 months ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆17Updated 2 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- Viral protein family functional prediction using protein language models☆21Updated 2 weeks ago
- ☆17Updated last year
- ☆62Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 4 months ago
- ☆65Updated last year
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆23Updated 3 years ago
- ☆32Updated last year
- Repository for general metagenomics Nextflow pipeline☆24Updated last week
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- ☆14Updated 4 years ago
- Build a map of genes present across a set of microbial genomes☆18Updated last week
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆50Updated 2 years ago
- Taxonomic classification of DNA sequences☆57Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- An algorithm for clustering metagenomic sequences.☆41Updated last month
- ☆39Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year