A-BN / ClermonTypingLinks
Clermont PCR method In-Silico
☆22Updated last year
Alternatives and similar repositories for ClermonTyping
Users that are interested in ClermonTyping are comparing it to the libraries listed below
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 2 months ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Discover and annotate the virome☆49Updated last week
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated 11 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆38Updated 2 weeks ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- ☆53Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Recombination-free trees☆60Updated this week
- Order and orientation of complete bacterial genomes☆28Updated last month
- Gene-flank analysis tool☆29Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Bacterial GWAS analysis☆43Updated last month