A-BN / ClermonTypingLinks
Clermont PCR method In-Silico
☆25Updated 2 years ago
Alternatives and similar repositories for ClermonTyping
Users that are interested in ClermonTyping are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 11 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 5 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆36Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated last week
- Gene Absence Presence Identification tool.☆27Updated 10 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Updated 7 months ago
- Discover and annotate the virome☆58Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated 2 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Recombination-free trees☆63Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 10 months ago
- Improving genome bins through the combination of different binning programs☆31Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆15Updated 3 years ago
- ☆20Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- Prophage Activity Estimator☆31Updated last year
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 5 months ago
- ☆25Updated last year