Clermont PCR method In-Silico
☆25Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for ClermonTyping
Users that are interested in ClermonTyping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆15Aug 5, 2022Updated 3 years ago
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆65Jun 5, 2025Updated 9 months ago
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- ☆136Mar 17, 2026Updated last week
- BSR-Based Allele Calling Algorithm☆148Mar 13, 2026Updated last week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆121May 21, 2024Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- ☆16Jun 21, 2023Updated 2 years ago
- Pan-genome wide association studies☆211May 29, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Feb 2, 2021Updated 5 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆91Mar 10, 2026Updated 2 weeks ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆131Feb 26, 2024Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆172Apr 16, 2025Updated 11 months ago
- ☆11Mar 10, 2024Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆86May 7, 2025Updated 10 months ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Systematic search of all known anti-phage systems.☆149Jan 22, 2026Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- ☆38Apr 14, 2022Updated 3 years ago
- snipit: summarise snps relative to your reference sequence☆168Jan 13, 2026Updated 2 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mutual nearest neighbor graphs for population structure inference and visualization☆18Dec 4, 2025Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆269Jan 2, 2026Updated 2 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆84Feb 4, 2026Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- Bacterial GWAS analysis☆47Updated this week
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 2 months ago