A-BN / ClermonTypingLinks
Clermont PCR method In-Silico
☆22Updated last year
Alternatives and similar repositories for ClermonTyping
Users that are interested in ClermonTyping are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated 2 weeks ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆12Updated 3 years ago
- Discover and annotate the virome☆45Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 3 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated last month
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆32Updated last week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- ☆34Updated last year
- Gene Absence Presence Identification tool.☆27Updated 4 months ago
- Recombination-free trees☆59Updated 4 months ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆43Updated last week
- Bifrost graph gene caller.☆95Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 3 months ago
- A taxonomic classifier of plasmids☆27Updated 4 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Plasmid analysis using rearrangement distances☆45Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- strain-level analysis tools☆39Updated 9 months ago
- Phage-Host Interaction Search Tool☆27Updated last year
- whole genome MLST analysis☆46Updated 2 months ago