A-BN / ClermonTyping
Clermont PCR method In-Silico
☆20Updated last year
Alternatives and similar repositories for ClermonTyping:
Users that are interested in ClermonTyping are comparing it to the libraries listed below
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Gene Absence Presence Identification tool.☆26Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- ☆20Updated 7 months ago
- Calculate assocations between genes and traits☆23Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆22Updated 3 weeks ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- IslandPath standalone software☆32Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated this week
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated this week
- plasmidVerify: plasmid contig verification tool☆13Updated 4 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆34Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Bacterial GWAS analysis☆40Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- viralFlye pipeline☆18Updated 8 months ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago