A-BN / ClermonTypingLinks
Clermont PCR method In-Silico
☆24Updated last year
Alternatives and similar repositories for ClermonTyping
Users that are interested in ClermonTyping are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Recombination-free trees☆62Updated 3 months ago
- Bifrost graph gene caller.☆96Updated 2 months ago
- Discover and annotate the virome☆54Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- ☆33Updated last year
- Gene Absence Presence Identification tool.☆27Updated 8 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last week
- ☆36Updated 8 months ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Assembly of Nanopore Sequencing☆17Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- viralFlye pipeline☆18Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago