Alternatives and similar repositories for re-benchmarking

Users that are interested in re-benchmarking are comparing it to the libraries listed below

• attayeb / snaq
  Qiime2 snakemake pipeline
  ☆20Updated 2 years ago
• Shenhav-and-Korem-labs / SCRuB
  ☆32Updated 11 months ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0
  SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
  ☆20Updated 3 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• zjshi / snv_analysis_almeida2019
  ☆21Updated 5 years ago
• elimoss / metagenomics_workflows
  Workflows for metagenomic sequence data processing and analysis.
  ☆16Updated 6 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 11 months ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆30Updated last year
• balabanmetin / uDance
  ☆43Updated last year
• chiulab / SURPI-plus-dist
  This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…
  ☆42Updated 6 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 3 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 5 months ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• ngs-docs / 2018-cicese-metatranscriptomics
  repo for cicese metatranscriptomics workshop, nov 2018
  ☆14Updated 5 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆42Updated 5 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated last month
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆16Updated last year
• btjaden / Rockhopper
  For computational analysis of bacterial RNA-seq data
  ☆11Updated 8 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated last week
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆37Updated last year
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆22Updated last year
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆32Updated 3 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 11 months ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆32Updated last year
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆15Updated last year
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• adamd3 / BactSeq
  A nextflow pipeline for performing bacterial RNA-Seq data analysis.
  ☆12Updated 2 months ago