bioinfo-ut / PlasmidSeeker
A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
☆35Updated 4 years ago
Alternatives and similar repositories for PlasmidSeeker:
Users that are interested in PlasmidSeeker are comparing it to the libraries listed below
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- whole genome MLST analysis☆42Updated last month
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- ☆20Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated last week
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- ☆36Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Gene Absence Presence Identification tool.☆26Updated last month
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 2 months ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆27Updated last week
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- ☆52Updated 3 years ago
- Order and orientation of complete bacterial genomes☆27Updated last year
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 3 months ago
- Recombination-free trees☆58Updated last month
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Gene-flank analysis tool☆27Updated 4 months ago