janka2012 / digISLinks
Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes
☆11Updated 4 years ago
Alternatives and similar repositories for digIS
Users that are interested in digIS are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆13Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆13Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆11Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆16Updated 2 years ago
- Plasmid and antimicrobial resistance pipeline☆16Updated 7 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 10 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Prediction of microbial interactions in complex communities☆12Updated 11 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- ☆7Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Updated last year
- ☆10Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- CFSAN Shigella Typing Pipeline☆14Updated 2 years ago