Alternatives and similar repositories for digIS:

Users that are interested in digIS are comparing it to the libraries listed below

• erinyoung / roundabout
  Finding regions of similarity between plasmids
  ☆16Updated 2 years ago
• stjacqrm / centroid
  tool to determine optimal refrerence genome given a set of fasta files
  ☆14Updated last year
• cchauve / HyAsP
  Hybrid Assembler for Plasmids
  ☆10Updated 2 years ago
• klebgenomics / Kleborate-viz
  Visualisation application for Klebsiella genotypes generated by Kleborate.
  ☆9Updated 3 years ago
• katholt / reddog-nf
  pipeline for read mapping, snp calling and annotation for bacterial genomes
  ☆11Updated 10 months ago
• maurijlozano / ISCompare
  ISCompare, an opensource program to identify Differentially Located Insertion Sequences
  ☆12Updated 6 months ago
• LanLab / ShigEiFinder
  Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
  ☆11Updated last year
• MDU-PHL / bohra
  A pipeline for bioinformatics analysis of bacterial genomes
  ☆19Updated 7 months ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 6 years ago
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆15Updated 4 years ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆21Updated 2 years ago
• rpetit3 / assembly-scan
  Generate basic stats for an assembly.
  ☆10Updated last year
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆17Updated last year
• appliedbinf / pima
  Plasmid and antimicrobial resistance pipeline
  ☆16Updated last month
• moshi4 / FastDTLmapper
  Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
  ☆15Updated 2 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆22Updated 6 months ago
• Arkadiy-Garber / MagicLamp
  A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
  ☆13Updated 6 months ago
• rpetit3 / pasty
  A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
  ☆12Updated 5 months ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated 10 months ago
• kwongj / maskrc-svg
  Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG
  ☆20Updated 5 years ago
• cruizperez / FastAAI
  ☆10Updated this week
• LaborBerlin / score-assemblies
  Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
  ☆24Updated 9 months ago
• lmc297 / bactaxR
  Bacterial taxonomy construction and evaluation in R
  ☆13Updated last year
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆12Updated last month
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated last week
• rdcrawford / cognac
  cognac: COre GeNe Alignment Concatenation
  ☆9Updated 3 years ago
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆25Updated 2 years ago
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 4 months ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆14Updated 2 months ago