esteinig / brickLinks
BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons
☆18Updated 4 months ago
Alternatives and similar repositories for brick
Users that are interested in brick are comparing it to the libraries listed below
Sorting:
- Visualize microbial evolution at the SNP level!☆15Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 months ago
- software to identify primers that can distinguish genomes☆21Updated 6 months ago
- ☆20Updated this week
- Genome size estimation from long read overlaps☆59Updated 2 weeks ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆23Updated 3 weeks ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Basecalling configuration prediction through FASTQ files☆21Updated 2 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 7 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated 8 months ago
- Remove human reads from a sequencing run☆40Updated last week
- A tool to detect acquired AMR genes directly from long read sequencing data.☆16Updated last week
- Resolving Species Level Classification Using Emu☆14Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated 11 months ago
- Neptune: Genomic Signature Discovery☆20Updated 8 months ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 9 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated last month
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- ☆10Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 8 months ago