esteinig / brick
BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons
☆13Updated 4 months ago
Alternatives and similar repositories for brick:
Users that are interested in brick are comparing it to the libraries listed below
- software to identify primers that can distinguish genomes☆21Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆25Updated last month
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆11Updated 9 months ago
- ☆13Updated last week
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- k-mers and the like☆20Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆14Updated 2 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆17Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated this week
- Visualize microbial evolution at the SNP level!☆14Updated 2 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆21Updated 2 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆11Updated 9 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 8 months ago
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆22Updated 2 months ago
- Plasmid analysis using rearrangement distances☆31Updated 2 months ago
- Remove human reads from a sequencing run☆36Updated 3 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 7 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated last year
- Generate basic stats for an assembly.☆10Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Targeted Detection and Reconstruction of Plasmids☆20Updated 8 months ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 months ago
- µbinfie blog☆17Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 5 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆16Updated 2 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Organism-specific interpretation of AMR genotypes☆10Updated 10 months ago