BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons
☆21Dec 9, 2025Updated 2 months ago
Alternatives and similar repositories for brick
Users that are interested in brick are comparing it to the libraries listed below
Sorting:
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Genome size estimation from long read overlaps☆81Updated this week
- ☆26Updated this week
- Plasmid analysis using rearrangement distances☆50Feb 19, 2026Updated last week
- Interpretative standards for AMR genotypes☆27Updated this week
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated last month
- ☆15Feb 10, 2025Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 3 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated last month
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆85Jan 24, 2026Updated last month
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- Gene-flank analysis tool☆37Dec 18, 2024Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- Recombination-free trees☆63Sep 1, 2025Updated 6 months ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆135Updated this week
- µbinfie blog☆19Jul 21, 2025Updated 7 months ago
- Basecalling configuration prediction through FASTQ files☆33Nov 24, 2025Updated 3 months ago
- Organism-specific interpretation of AMR genotypes☆15Mar 13, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated last month
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆104Feb 9, 2026Updated 3 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 10 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Feb 20, 2026Updated last week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Multiple Bacteria Genome Compressor (MBGC)☆11Feb 20, 2026Updated last week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated 11 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 5 months ago
- ☆10Apr 16, 2025Updated 10 months ago
- ☆11Mar 10, 2024Updated last year
- ☆10Jun 9, 2025Updated 8 months ago
- ☆18Mar 20, 2025Updated 11 months ago