BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons
☆22Dec 9, 2025Updated 6 months ago
Alternatives and similar repositories for brick
Users that are interested in brick are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated 3 weeks ago
- Genome size estimation from long read overlaps☆91May 1, 2026Updated last month
- ☆31Jun 6, 2026Updated last week
- Plasmid analysis using rearrangement distances☆55May 28, 2026Updated 2 weeks ago
- Interpretative standards for AMR genotypes☆30May 11, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Feb 10, 2025Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 4 months ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated last month
- Gene-flank analysis tool☆37Dec 18, 2024Updated last year
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Jun 4, 2026Updated last week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆108Jun 2, 2026Updated last week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆142Updated this week
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated 2 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Recombination-free trees☆70Apr 26, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- ☆10Jun 9, 2025Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Organism-specific interpretation of AMR genotypes☆17Mar 17, 2026Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Apr 26, 2026Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆57May 24, 2026Updated 2 weeks ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated last year
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 2 months ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 4 months ago
- µbinfie blog☆19Jul 21, 2025Updated 10 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆46Aug 20, 2025Updated 9 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jun 1, 2026Updated last week
- ☆18Mar 20, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Updated this week