nafizh / NeuBI
Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.
☆18Updated last year
Alternatives and similar repositories for NeuBI:
Users that are interested in NeuBI are comparing it to the libraries listed below
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated this week
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- ☆31Updated 3 years ago
- Nanopore UMI-linked consensus sequencing☆14Updated 4 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆13Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆21Updated 3 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 2 months ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆15Updated last month
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 3 years ago
- ☆17Updated 2 years ago
- ☆45Updated last year
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆52Updated 3 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆37Updated 2 months ago
- ☆19Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 7 months ago
- ☆29Updated 2 weeks ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated this week
- metabolic heatmap☆19Updated 5 years ago
- ☆19Updated 2 years ago
- Convert genbank files to a swath of other formats☆16Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 6 months ago