nafizh / NeuBILinks
Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.
☆19Updated 2 years ago
Alternatives and similar repositories for NeuBI
Users that are interested in NeuBI are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆17Updated 5 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆42Updated 6 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- ☆23Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated last month
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 3 years ago
- ☆30Updated 6 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆23Updated 2 years ago
- UFCG: Universal Fungal Core Genes☆33Updated 4 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- Prophage Activity Estimator☆26Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last week
- ☆31Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- ☆32Updated 4 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 6 months ago