Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.
☆18Mar 25, 2023Updated 3 years ago
Alternatives and similar repositories for NeuBI
Users that are interested in NeuBI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 3 years ago
- ☆19Oct 4, 2023Updated 2 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆41Feb 9, 2022Updated 4 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- ☆27Jan 30, 2025Updated last year
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- A Better Sequencing Simulator for Metagenomics☆20May 8, 2020Updated 6 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 22, 2026Updated 2 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- ☆19Jan 16, 2024Updated 2 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 4 months ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- ☆22Mar 25, 2014Updated 12 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 5 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Oct 10, 2023Updated 2 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆108Feb 15, 2024Updated 2 years ago
- ☆36Nov 11, 2022Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 7 months ago
- Jupyter notebooks from our weekly (or so) hackathons☆11Dec 3, 2024Updated last year
- Find Unique genomic Regions☆32Mar 18, 2026Updated last month
- Organism-specific interpretation of AMR genotypes☆16Mar 17, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆25Apr 1, 2026Updated last month
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 3 years ago
- ☆29Jun 12, 2024Updated last year
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Predict AMPs in (meta)genomes and peptides☆90Nov 24, 2025Updated 5 months ago
- Masked language models of biosynthetic gene clusters☆17Jul 27, 2022Updated 3 years ago