thackl / proovframe
frame-shift correction for long-read (meta)genomics
☆33Updated last year
Alternatives and similar repositories for proovframe:
Users that are interested in proovframe are comparing it to the libraries listed below
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 4 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated last week
- Recombination-free trees☆57Updated last year
- Bacterial GWAS analysis☆36Updated this week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 7 months ago
- MAGScoT - a MAG scoring and refinement tool☆31Updated 4 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Calculate assocations between genes and traits☆23Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 7 months ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Colinear block visualisation tool☆30Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆26Updated 4 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆30Updated 6 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Intra-species bacterial contamination detection☆25Updated 2 weeks ago
- Plasmid analysis using rearrangement distances☆31Updated 3 months ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 7 months ago
- Genome size estimation from long read overlaps☆49Updated 2 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆19Updated 5 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆19Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Resolving Species Level Classification Using Emu☆12Updated 8 months ago
- Gene-flank analysis tool☆27Updated 2 months ago