thackl / proovframeLinks
frame-shift correction for long-read (meta)genomics
☆33Updated 2 years ago
Alternatives and similar repositories for proovframe
Users that are interested in proovframe are comparing it to the libraries listed below
Sorting:
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Recombination-free trees☆63Updated 5 months ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆23Updated 6 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 5 months ago
- Colinear block visualisation tool☆31Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 11 months ago
- Remove human reads from a sequencing run☆47Updated last month
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Order and orientation of complete bacterial genomes☆29Updated 6 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- Intra-species bacterial contamination detection☆25Updated this week
- Gene-flank analysis tool☆37Updated last year
- Bacterial GWAS analysis☆46Updated 3 weeks ago