thackl / proovframe
frame-shift correction for long-read (meta)genomics
☆30Updated 9 months ago
Related projects: ⓘ
- Bioinformatics tool for Locus Visualisation☆15Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆35Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisation☆33Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆22Updated 4 months ago
- Intra-species bacterial contamination detection☆22Updated last year
- MAGScoT - a MAG scoring and refinement tool☆27Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆38Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆24Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆30Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆20Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆18Updated 2 months ago
- ☆26Updated this week
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆25Updated 3 weeks ago
- Plasmid analysis using rearrangement distances☆28Updated 3 weeks ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Colinear block visualisation tool☆30Updated 8 months ago
- Resolving Species Level Classification Using Emu☆12Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Get microbial sequence data easier and faster☆28Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆18Updated 5 years ago
- Bacterial GWAS analysis☆28Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 5 months ago
- Targeted Detection and Reconstruction of Plasmids☆19Updated 4 months ago
- Finding regions of similarity between plasmids☆15Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆28Updated 3 weeks ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆21Updated 3 weeks ago
- Bacterial taxonomy construction and evaluation in R☆12Updated 7 months ago