xthua / bacantLinks
This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
☆21Updated 2 years ago
Alternatives and similar repositories for bacant
Users that are interested in bacant are comparing it to the libraries listed below
Sorting:
- ☆20Updated 9 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- ☆24Updated 6 years ago
- ☆50Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Prophage Activity Estimator☆26Updated last year
- Gene Absence Presence Identification tool.☆26Updated 2 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- IslandPath standalone software☆32Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Discover and annotate the virome☆42Updated last month
- Calculate assocations between genes and traits☆23Updated 2 months ago
- ☆18Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- ☆25Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago