This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
☆21Mar 18, 2026Updated 7 months ago
Alternatives and similar repositories for bacant
Users that are interested in bacant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 6 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Oct 5, 2026Updated 3 weeks ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆54Apr 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- ☆23Apr 3, 2023Updated 3 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 10 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆53Feb 2, 2021Updated 5 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 8 months ago
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 7 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated last year
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last month
- ☆38Nov 11, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 4 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated last month
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 4 months ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 5 years ago
- ☆20Nov 11, 2024Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆75Oct 6, 2020Updated 6 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆51Sep 4, 2026Updated last month
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆22Oct 7, 2026Updated 3 weeks ago
- A library of Machine Learning tools to predict antibiotic resistance from NGS data☆18May 30, 2022Updated 4 years ago
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 3 years ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 4 months ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago