xthua / bacant
This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
☆20Updated last year
Alternatives and similar repositories for bacant:
Users that are interested in bacant are comparing it to the libraries listed below
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- ☆18Updated 4 months ago
- Plasmid exploration of bacterial genomes☆18Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 6 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Prophage Activity Estimator☆26Updated 7 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- ☆47Updated 9 months ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆12Updated 4 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆23Updated 3 years ago
- IslandPath standalone software☆31Updated last year
- Extract metadata from biosamples in NCBI☆11Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- ☆25Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- Discover and annotate the virome☆35Updated 3 months ago
- KEGG Module Evaluation Tool☆27Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated 2 months ago
- ☆13Updated 7 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 2 years ago