klebgenomics / Kleborate-vizLinks
Visualisation application for Klebsiella genotypes generated by Kleborate.
☆9Updated 4 years ago
Alternatives and similar repositories for Kleborate-viz
Users that are interested in Kleborate-viz are comparing it to the libraries listed below
Sorting:
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆10Updated 4 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Genomewide Epistasis Analysis on Bacteria☆14Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ☆14Updated 3 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 9 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 4 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Population analysis PIPEline 🛠🧬☆20Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 6 months ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 10 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- ☆9Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- ☆13Updated 7 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago