klebgenomics / Kleborate-vizLinks
Visualisation application for Klebsiella genotypes generated by Kleborate.
☆10Updated 4 months ago
Alternatives and similar repositories for Kleborate-viz
Users that are interested in Kleborate-viz are comparing it to the libraries listed below
Sorting:
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 weeks ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 8 months ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- ☆14Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Updated 4 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Updated 4 years ago
- Parallel/Homoplasic SNP Finder☆21Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 11 months ago
- ☆13Updated 8 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Neptune: Genomic Signature Discovery☆21Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Interpretative standards for AMR genotypes☆26Updated last week
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆61Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago