klebgenomics / Kleborate-viz
Visualisation application for Klebsiella genotypes generated by Kleborate.
☆9Updated 3 years ago
Alternatives and similar repositories for Kleborate-viz:
Users that are interested in Kleborate-viz are comparing it to the libraries listed below
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆11Updated 10 months ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 4 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 3 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 6 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆41Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Calculate assocations between genes and traits☆20Updated 2 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆23Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆24Updated 9 months ago
- ☆13Updated 7 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 4 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆16Updated 9 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- Intra-species bacterial contamination detection☆24Updated last month
- Genome size estimation from long read overlaps☆47Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated last month