kussell-lab / mcorr
Inferring bacterial recombination rates from large-scale sequencing datasets.
☆42Updated 2 years ago
Alternatives and similar repositories for mcorr:
Users that are interested in mcorr are comparing it to the libraries listed below
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆26Updated 4 months ago
- Discover and annotate the virome☆39Updated 5 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Gene-flank analysis tool☆27Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆19Updated 2 years ago
- IslandPath standalone software☆31Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Split Kmer Analysis☆62Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- whole genome MLST analysis☆41Updated this week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated 3 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- ☆52Updated 3 years ago
- IS mapping software☆53Updated 3 years ago
- Recombination-free trees☆57Updated last year
- BEAV: Bacterial Element Annotation reVamped☆61Updated 4 months ago
- Bacterial GWAS analysis☆37Updated last week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated 3 weeks ago
- ☆24Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago