BradyAJohnston / plasmapR
Creating plasmid maps inside ggplot.
☆86Updated 5 months ago
Alternatives and similar repositories for plasmapR
Users that are interested in plasmapR are comparing it to the libraries listed below
Sorting:
- An R package designed for drawing gene arrow maps☆77Updated 3 weeks ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Genome wide orthology inference and dNdS estimation☆90Updated last year
- gutSMASH☆53Updated 4 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆58Updated 8 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 months ago
- functions for analyzing phyloseq data☆27Updated 3 months ago
- A microbiome analysis toolkit for R☆22Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Microbiome analysis☆51Updated last week
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆21Updated 3 weeks ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆78Updated 2 months ago
- Orchestrating Microbiome Analysis☆96Updated this week
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Simple R utilities for working with HMMER☆19Updated 7 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆42Updated this week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆65Updated 6 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆87Updated last week
- R implementation of the LEfSe method☆58Updated 3 weeks ago
- Speedy versions of phyloseq functions☆48Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 8 months ago