Wanli-HE / Plaspline
☆15Updated last year
Alternatives and similar repositories for Plaspline:
Users that are interested in Plaspline are comparing it to the libraries listed below
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Population genomics from metagenomes☆11Updated 6 months ago
- ☆13Updated 7 years ago
- Prophage Activity Estimator☆26Updated 9 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- Calculate assocations between genes and traits☆23Updated 2 weeks ago
- ☆25Updated last year
- KEGG Module Evaluation Tool☆29Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- ☆20Updated 6 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- ☆13Updated last year
- ☆16Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Bacterial GWAS analysis☆37Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 3 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated last month