Wanli-HE / Plaspline

Related projects ⓘ

Alternatives and complementary repositories for Plaspline

• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…
  ☆40Updated 3 weeks ago
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆24Updated last month
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆29Updated 2 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆46Updated 4 months ago
• lauriebelch / SOCfinder
  ☆14Updated last week
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆26Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆28Updated last year
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆21Updated last year
• EnvGen / POGENOM
  Population genomics from metagenomes
  ☆11Updated 2 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 5 months ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆17Updated last year
• AlexanderLabWHOI / EukHeist
  ☆23Updated last year
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆25Updated last week
• valflanza / accnet
  ☆12Updated 7 years ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 7 months ago
• wandreopoulos / deeplasmid
  ☆17Updated 2 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 7 months ago
• mgabriell1 / EUKsemble
  Pipeline for identification of eukaryotic contigs in metagenomic assemblies
  ☆12Updated 8 months ago
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆24Updated 2 years ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆19Updated 3 weeks ago
• labgem / PlaScope
  Plasmid exploration of bacterial genomes
  ☆17Updated 2 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆25Updated 3 weeks ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆30Updated 11 months ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆19Updated last year
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆19Updated 10 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆18Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆32Updated last month
• linsalrob / sphae
  Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
  ☆25Updated this week
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆20Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year