Alternatives and similar repositories for DEsingle

Users that are interested in DEsingle are comparing it to the libraries listed below

• liulab-dfci / RIMA_pipeline
  ☆81Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆61Updated 7 months ago
• cssmillie / ulcerative_colitis
  ☆63Updated 4 years ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆52Updated this week
• KChen-lab / METAFlux
  ☆66Updated 11 months ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 5 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 5 years ago
• AllonKleinLab / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆38Updated 5 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 4 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆105Updated last month
• Coolgenome / iTALK
  ☆61Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆54Updated last year
• rpolicastro / scProportionTest
  ☆68Updated last year
• cellgeni / batchbench
  ☆46Updated 3 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆94Updated 5 years ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆50Updated 7 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 3 years ago
• AllonKleinLab / SPRING_dev
  ☆69Updated last year
• JunyueC / sci-RNA-seq3_pipeline
  Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
  ☆43Updated 4 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆62Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆79Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated last year