miaozhun / DEsingleLinks
Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.
☆31Updated 2 years ago
Alternatives and similar repositories for DEsingle
Users that are interested in DEsingle are comparing it to the libraries listed below
Sorting:
- ☆71Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆111Updated last year
- ☆57Updated 7 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 3 months ago
- ☆63Updated 5 years ago
- ☆74Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- Tools for single-cell data processing☆128Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- ☆62Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆88Updated last month
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- ☆59Updated last year
- ☆88Updated 3 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆87Updated 3 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 months ago