miaozhun / DEsingle
Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.
☆30Updated last year
Related projects: ⓘ
- Mouse cell atlas☆58Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆59Updated 9 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆64Updated 4 years ago
- ☆57Updated 4 years ago
- ☆56Updated last year
- ☆69Updated 8 months ago
- R package for Pathway RespOnsive GENe activity inference☆92Updated last year
- ☆57Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆87Updated 9 months ago
- Tools used in Human Cell Landscape(HCL)☆52Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- ☆55Updated 6 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆56Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆15Updated 4 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆50Updated 8 months ago
- ☆64Updated 5 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆73Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆68Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆72Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆88Updated 3 years ago
- Code related to the Celligner manuscript☆43Updated 3 years ago
- collection of notebooks with different cytoscape workflows☆47Updated last year
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- ☆55Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆34Updated 5 years ago
- ☆53Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆80Updated last year
- Senescent Cell Identification☆25Updated 6 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆73Updated 11 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆62Updated 2 weeks ago