gabrielodom / pathwayPCALinks
integrative pathway analysis with modern PCA methodology and gene selection
☆11Updated 2 years ago
Alternatives and similar repositories for pathwayPCA
Users that are interested in pathwayPCA are comparing it to the libraries listed below
Sorting:
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated 2 weeks ago
- TOP results by CONfident efFECT Sizes.☆14Updated 9 months ago
- ☆10Updated 6 years ago
- R interface to 'Gos'☆39Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 4 months ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 9 months ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 3 months ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 months ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 5 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago
- The blog of tidyomics☆14Updated 2 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆28Updated last month
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 5 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 5 months ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 4 months ago