BaderLab / Tempora
Pathway-based trajectory inference method for time-series scRNAseq data
☆25Updated 3 years ago
Alternatives and similar repositories for Tempora:
Users that are interested in Tempora are comparing it to the libraries listed below
- An r package that works as a wrapper to homologene☆45Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Toolkit for Single-Cell Velocity☆55Updated 4 months ago
- ☆41Updated 4 years ago
- ☆29Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- R package for Bioconductor submission☆34Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- ☆22Updated 6 months ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆27Updated last year
- CDSeq R Package☆20Updated 2 years ago
- Single-cell Case Control Analysis☆48Updated 6 months ago