BaderLab / Tempora
Pathway-based trajectory inference method for time-series scRNAseq data
☆25Updated 3 years ago
Alternatives and similar repositories for Tempora:
Users that are interested in Tempora are comparing it to the libraries listed below
- ☆40Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- An r package that works as a wrapper to homologene☆44Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- R package for Bioconductor submission☆33Updated 2 years ago
- ☆18Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- ☆29Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- R package for analysing single cell data☆54Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last week
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year