Alternatives and similar repositories for Tempora:

Users that are interested in Tempora are comparing it to the libraries listed below

• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆36Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated last year
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆35Updated 3 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆19Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• LTLA / batchelor
  Clone of the Bioconductor repository for the batchelor package.
  ☆16Updated 7 months ago
• satijalab / azimuth-references
  ☆20Updated 3 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 8 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆26Updated 7 months ago
• kkang7 / CDSeq_R_Package
  CDSeq R Package
  ☆18Updated 2 years ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆27Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 3 months ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 4 years ago
• RRHO2 / RRHO2
  ☆16Updated 3 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated 2 weeks ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆54Updated last month
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆19Updated 2 years ago
• HelenaLC / muscat-comparison
  ☆12Updated 9 months ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆14Updated last year
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• tk382 / HIPPO
  Heterogeneity Induced Pre-Processing tOol
  ☆18Updated 3 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆20Updated 10 months ago