Scripts for data and figure generation in SAVER paper
☆19Jan 5, 2021Updated 5 years ago
Alternatives and similar repositories for SAVER-paper
Users that are interested in SAVER-paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆118Nov 28, 2024Updated last year
- ☆10Oct 31, 2021Updated 5 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- ☆40May 10, 2026Updated 5 months ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆17Nov 5, 2024Updated 2 years ago
- Turning the quasi-UMI method into a bioconductor package☆11Mar 3, 2021Updated 5 years ago
- ☆10Aug 12, 2018Updated 8 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- ☆12Aug 23, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 10, 2026Updated 3 weeks ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- ☆88Jul 13, 2020Updated 6 years ago
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆13May 18, 2018Updated 8 years ago
- MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…☆23Jun 16, 2017Updated 9 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆61Jul 5, 2019Updated 7 years ago
- Accurate and robust imputation of scRNA-seq data☆102Aug 21, 2019Updated 7 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆91Jan 31, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Geometry-preserving random sampling☆98Oct 29, 2024Updated 2 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- a unified single-cell data integration framework by optimal transport☆41Aug 23, 2026Updated 2 months ago
- Gene perturbation prediction using LLM embeddings☆17Sep 16, 2026Updated last month
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 3 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 7 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆44Jul 1, 2024Updated 2 years ago
- Simple simulation of single-cell RNA sequencing data☆234May 20, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clustering through Imputation and Dimensionality Reduction☆64Sep 21, 2017Updated 9 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 5 years ago
- Deep count autoencoder for denoising scRNA-seq data☆275Mar 21, 2024Updated 2 years ago
- COVID19 profiling of lung tissue with imaging mass cytometry (IMC)☆11Mar 29, 2021Updated 5 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆24Feb 14, 2021Updated 5 years ago
- scKAN: Interpretable Single-cell Analysis for Cell-type-specific Gene Discovery and Drug Repurposing via Kolmogorov-Arnold Networks☆12Sep 25, 2025Updated last year
- Presentation at the Single Cell Nanocourse in Spring 2017 at Harvard Medical School☆10Mar 7, 2017Updated 9 years ago