quinlan-lab / bedqc
BED QC tool (in the making)
☆16Updated 2 years ago
Alternatives and similar repositories for bedqc:
Users that are interested in bedqc are comparing it to the libraries listed below
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- ☆23Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Unfazed by genomic variant phasing☆26Updated 10 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Fast sequencing data quality metrics☆26Updated 2 weeks ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆20Updated 2 months ago
- k-mer similarity analysis pipeline☆21Updated 2 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- ☆14Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- v2.x of the microassembly based somatic variant caller☆20Updated 3 weeks ago
- ☆11Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago