BED QC tool (in the making)
☆18Aug 19, 2022Updated 4 years ago
Alternatives and similar repositories for bedqc
Users that are interested in bedqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- ☆18Jul 21, 2026Updated 2 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Sep 8, 2026Updated 2 weeks ago
- Modified or extracted from other programs☆15Dec 14, 2011Updated 14 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Genome browser hub for the T2T genomes and resources☆31Aug 10, 2026Updated last month
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 2 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 15 years ago
- ☆19Jul 15, 2026Updated 2 months ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- k-mer similarity analysis pipeline☆24Sep 1, 2026Updated 3 weeks ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Mar 15, 2023Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- Post-verkko graph and assembly curation in Python.☆34Aug 20, 2026Updated last month
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- sort genomic data☆36Nov 7, 2025Updated 10 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 7 months ago
- Enumerating bubbles in pangenome graphs☆16Aug 26, 2026Updated 3 weeks ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago