Alternatives and similar repositories for Carafe

Users that are interested in Carafe are comparing it to the libraries listed below

• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated last week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆47Updated 4 months ago
• MatteoLacki / timspy
  ☆20Updated 4 years ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆47Updated 5 months ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated last month
• MannLabs / timsrust
  ☆27Updated 2 months ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆58Updated 3 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆38Updated last month
• MannLabs / alphadia
  modular & open DIA search
  ☆73Updated last week
• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around ProForma and complex theoretical fragmentation
  ☆33Updated 2 weeks ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆21Updated this week
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 4 months ago
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated last month
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated 3 weeks ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆88Updated 3 weeks ago
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated 5 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆44Updated 2 weeks ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 4 months ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated 2 months ago
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆59Updated last month
• gtluu / timsconvert
  ☆38Updated 4 months ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆128Updated 2 weeks ago
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆27Updated this week
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• cox-labs / CoxLab_Bug_Reporting
  MaxQuant and Perseus Bug Reporting
  ☆8Updated 4 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆28Updated last month
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 6 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆23Updated 4 years ago
• thermofisherlsms / RawFileReader
  ☆59Updated 4 months ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆26Updated 3 weeks ago