High quality in silico spectral library generation for data-independent acquisition proteomics
☆26Oct 24, 2026Updated this week
Alternatives and similar repositories for Carafe
Users that are interested in Carafe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆37Aug 22, 2026Updated 2 months ago
- ☆28Updated this week
- ☆39Updated this week
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆18Oct 21, 2026Updated last week
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆52Oct 23, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MaxQuant and Perseus Bug Reporting☆10Mar 19, 2025Updated last year
- Fast analysis of DIA proteomics experiments☆22Oct 20, 2026Updated last week
- Democratizing ML in proteomics☆57Sep 15, 2026Updated last month
- Deep learning framework for proteomics☆161Aug 31, 2026Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆56Updated this week
- High-performance Rust + Python readers for mass spectrometry / proteomics raw data.☆15Updated this week
- Python bindings to access bruker mass spec data☆13Dec 10, 2024Updated last year
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- Instrument Application Programming Interface☆57May 11, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Oct 22, 2026Updated last week
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 7 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated 2 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Aug 19, 2026Updated 2 months ago
- GlyCombo, a combinatorial glycan composition assignment tool☆13May 4, 2026Updated 5 months ago
- LabIcons is a collection of professional illustrations of CPM laboratory equipment for use in papers and presentations.☆24Aug 3, 2026Updated 2 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆59Oct 23, 2026Updated last week
- A library for QC report based on MultiQC framework☆35Oct 23, 2026Updated last week
- LIMPA DAVIS Proteomics Pipeline☆21Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rescoring and spectral library generation pipeline for proteomics.☆60Oct 19, 2026Updated last week
- ☆44Oct 18, 2026Updated last week
- A label free quantification tool.☆20Jan 13, 2026Updated 9 months ago
- Proteomics search & quantification so fast that it feels like magic☆317Oct 22, 2026Updated last week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆493Sep 16, 2026Updated last month
- Infrastructure of AlphaX ecosystem☆60Oct 22, 2026Updated last week
- Quantitative proteomics workflow☆17Sep 30, 2022Updated 4 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Sep 1, 2026Updated last month
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆43Oct 19, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆43Updated this week
- PDV: an integrative proteomics data viewer☆68Sep 22, 2026Updated last month
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- A list of tools on proteomics using deep learning☆111May 14, 2026Updated 5 months ago
- A cross-platform proteomics data analysis suite☆327Updated this week
- HUPO-PSI mass spectrometry CV☆42Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 4 months ago