ZhuangLab / MERlin
MERFISH decoding software
☆25Updated last year
Alternatives and similar repositories for MERlin:
Users that are interested in MERlin are comparing it to the libraries listed below
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆25Updated 4 months ago
- ☆25Updated 4 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- ☆20Updated 2 years ago
- ☆48Updated this week
- Test genes for Spatial Variation☆14Updated last month
- CAST package☆29Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆17Updated 6 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- ☆21Updated 4 years ago
- ☆27Updated 4 months ago
- Repository for storing prototype functionality implementations for the BKP☆22Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated last month
- ☆33Updated 10 months ago
- ☆25Updated 5 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- ☆14Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year
- A package for the analysis of Imaging Mass Cytometry data☆13Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆74Updated last month
- ☆37Updated 2 months ago
- Building Gene Sets and Mapping mFISH Data☆16Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆15Updated 3 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆14Updated 2 months ago
- ☆11Updated 5 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆15Updated 3 years ago
- data for spacejam2☆17Updated 2 years ago