HelenaLC / simulation-comparisonLinks
Snakemake workflow to benchmark scRNA-seq data simulators
☆14Updated 3 years ago
Alternatives and similar repositories for simulation-comparison
Users that are interested in simulation-comparison are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 years ago
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- ☆19Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated last week
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated 3 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Updated 5 years ago
- CiteFuse:☆28Updated 2 years ago
- Perturb-seq analysis package☆16Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- ☆12Updated last year
- Version 2.1.0 released☆23Updated 6 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Updated 9 months ago
- ☆12Updated last year
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago