HelenaLC / simulation-comparisonLinks
Snakemake workflow to benchmark scRNA-seq data simulators
☆13Updated 3 years ago
Alternatives and similar repositories for simulation-comparison
Users that are interested in simulation-comparison are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆11Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- ☆12Updated last year
- ☆12Updated last year
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last week
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- ☆23Updated 7 months ago
- CiteFuse:☆28Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 10 months ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Perturb-seq analysis package☆14Updated last year
- A single cell sequencing read simulator.☆33Updated 10 months ago
- Fast motif matching in R☆46Updated last year
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago