HelenaLC / simulation-comparisonLinks
Snakemake workflow to benchmark scRNA-seq data simulators
☆13Updated 2 years ago
Alternatives and similar repositories for simulation-comparison
Users that are interested in simulation-comparison are comparing it to the libraries listed below
Sorting:
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆27Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago
- CiteFuse:☆28Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆13Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆9Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last week
- ☆12Updated last year
- CellAnn☆12Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- ☆16Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆12Updated last year
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆12Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Gene Expression Decomposition and Integration☆18Updated 4 months ago