Alternatives and similar repositories for scDesign

Users that are interested in scDesign are comparing it to the libraries listed below

• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆39Updated 3 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated last year
• limix / CellRegMap
  CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
  ☆22Updated last year
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆26Updated 6 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆42Updated 4 years ago
• pachterlab / BHGP_2022
  ☆21Updated 3 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆33Updated 2 weeks ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆55Updated 3 months ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• msraredon / Connectome
  ☆29Updated 3 years ago
• jingxinfu / TIDEpy
  TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…
  ☆35Updated 3 years ago
• SONGDONGYUAN1994 / PseudotimeDE
  A robust DE test method that accounts for the uncertainty in pseudotime inference
  ☆36Updated 6 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆54Updated last year
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 2 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 6 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆73Updated 3 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆16Updated 4 years ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆25Updated last year
• Tchanders / network_inference_tutorials
  ☆31Updated 6 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• brian-cleary / CS-SMAF
  ☆18Updated 8 years ago