A statistical simulator for rational scRNA-seq experimental design
☆13Dec 14, 2020Updated 5 years ago
Alternatives and similar repositories for scDesign
Users that are interested in scDesign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Sep 8, 2024Updated last year
- Statistical analysis, clustering and visualinzing scientific data with hassle free☆26Jul 8, 2025Updated 11 months ago
- ☆18May 15, 2025Updated last year
- Regulatory networks with Direct Information in python☆41Mar 9, 2023Updated 3 years ago
- ☆39Apr 21, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆20Dec 9, 2021Updated 4 years ago
- pytorch dataloaders for single-cell perturbation data☆45Apr 24, 2026Updated last month
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- ☆17Updated this week
- A python package for calculating local cell specific networks☆17Nov 17, 2023Updated 2 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- ☆17Mar 11, 2024Updated 2 years ago
- ☆14Mar 18, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- ☆14Jul 16, 2024Updated last year
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- Pytorch implementation of EpiFoundation☆27Feb 25, 2025Updated last year
- ☆15Jan 13, 2021Updated 5 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- R package that contains plink binaries for windows, mac and linux☆16Oct 14, 2019Updated 6 years ago
- Gradient Unwarping in Python☆15May 9, 2014Updated 12 years ago
- ☆19Jul 17, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆40Mar 2, 2025Updated last year
- Harvard-Oxford Atlas 2.0 Subcortical parcellations of Human Connectome Project (HCP) subjects☆13Aug 7, 2024Updated last year
- Python wrapper for the EDDL library.☆13Jun 14, 2022Updated 3 years ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- A visualization software for antibody multi sequence alignment☆22Jun 15, 2024Updated last year
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- Manifold learning to detect cell-cell interactions.☆59May 19, 2026Updated 3 weeks ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆70Dec 29, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The official implementation for "SANGO".☆11Mar 17, 2024Updated 2 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 4 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 4 years ago
- Course Notes for PSYC 621 (Bayesian Data Analaysis, 2019 Fall)☆15Jun 5, 2020Updated 6 years ago
- Bringing core concepts from anywidget to R☆21Aug 10, 2025Updated 10 months ago