Vivianstats / scDesignLinks
A statistical simulator for rational scRNA-seq experimental design
☆12Updated 4 years ago
Alternatives and similar repositories for scDesign
Users that are interested in scDesign are comparing it to the libraries listed below
Sorting:
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Multi-omics studies are available here☆52Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- CiteFuse:☆28Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- RNA velocity validation☆22Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- ☆43Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- ☆31Updated 6 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Hierarchical classification of cells☆26Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- ☆48Updated 7 years ago
- ☆37Updated 7 months ago