Vivianstats / scDesignLinks
A statistical simulator for rational scRNA-seq experimental design
☆12Updated 5 years ago
Alternatives and similar repositories for scDesign
Users that are interested in scDesign are comparing it to the libraries listed below
Sorting:
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆23Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ☆31Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ☆16Updated 8 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- CiteFuse:☆28Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- ☆43Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31Updated 6 months ago
- Hierarchical classification of cells☆28Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- ☆26Updated 6 months ago
- RNA velocity validation☆22Updated 3 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 2 months ago
- cTPnet Package☆27Updated 3 years ago
- ☆21Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago