Vivianstats / scDesign
A statistical simulator for rational scRNA-seq experimental design
☆12Updated 4 years ago
Alternatives and similar repositories for scDesign:
Users that are interested in scDesign are comparing it to the libraries listed below
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 7 months ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated 3 months ago
- Hierarchical classification of cells☆23Updated 8 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last week
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated last week
- CDSeq R Package☆20Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆41Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated this week
- Information-based dimensionality reduction☆29Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆18Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 8 months ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆34Updated last month
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year