Vivianstats / scDesignLinks
A statistical simulator for rational scRNA-seq experimental design
☆12Updated 4 years ago
Alternatives and similar repositories for scDesign
Users that are interested in scDesign are comparing it to the libraries listed below
Sorting:
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Hierarchical classification of cells☆25Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- RNA velocity validation☆22Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- CiteFuse:☆28Updated 2 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- An analytics package for single cell data☆22Updated 3 years ago
- ☆21Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated this week
- ☆29Updated 3 years ago
- A tool for single-cell data analysis.☆41Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 2 weeks ago
- Clone of the Bioconductor repository for the scran package.☆43Updated 11 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- ☆42Updated 4 years ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆36Updated 5 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago