kharchenkolab / sccoreLinks
Core utilities for single-cell RNA-seq
☆12Updated 2 months ago
Alternatives and similar repositories for sccore
Users that are interested in sccore are comparing it to the libraries listed below
Sorting:
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Gene-level general linear mixed model☆21Updated 5 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆24Updated 3 weeks ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 6 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- ☆11Updated 10 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 2 months ago
- ☆10Updated 6 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- ☆14Updated 6 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Automatic selection of number of principal components☆16Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 7 months ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Archived version of RUVSeq☆8Updated 8 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆13Updated 6 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year