Core utilities for single-cell RNA-seq
☆13Jun 16, 2026Updated last month
Alternatives and similar repositories for sccore
Users that are interested in sccore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lightweight validation tool for checking function arguments and data analysis scripts.☆12Dec 24, 2024Updated last year
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated 10 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Model-based clustering package for mixed data☆13May 21, 2026Updated 2 months ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Data and analysis scripts for understanding molecular entropies, including conformer flexibility☆13Mar 29, 2021Updated 5 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Volume-regularized NMF☆18Apr 14, 2022Updated 4 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆66Apr 14, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- R package to assess the calibration performance of prediction models. See Barreñada et al. (2025) <doi:10.48550/arXiv.2503.08389>, De Coc…☆26Mar 31, 2026Updated 3 months ago
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 6 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- A library for solving POMDPs☆11Apr 15, 2025Updated last year
- DNA Encoded Library Data Analysis toolkit for DEL data analysis☆10Jun 12, 2025Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for large-scale similarity/distance computation☆30Feb 27, 2026Updated 4 months ago
- Biological insights into the epigenetic ageing clock☆11Feb 11, 2020Updated 6 years ago
- AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.☆11Jun 11, 2026Updated last month
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 2 weeks ago
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated last year
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆29Nov 16, 2024Updated last year
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- ☆12Jun 19, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆13Oct 21, 2018Updated 7 years ago
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated 2 weeks ago
- Rapid RNA-seq pipeline using AWS lambda functions for alignment☆13Mar 22, 2019Updated 7 years ago
- ☆11May 12, 2026Updated 2 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- An integrated web-based platform for molecular descriptor and fingerprint computation☆13Nov 9, 2016Updated 9 years ago
- Gene orthologs for model organisms in a tidy data format☆16Sep 29, 2022Updated 3 years ago