Create QC and summary reports for Alevin output
☆31Apr 28, 2026Updated this week
Alternatives and similar repositories for alevinQC
Users that are interested in alevinQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Nov 9, 2018Updated 7 years ago
- R package wrapping bedtools☆45Mar 19, 2025Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11May 27, 2024Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆69Apr 26, 2024Updated 2 years ago
- The Vini in silico model of cancer☆12Mar 7, 2026Updated last month
- Brain Analysis using Graph Theory☆12Jul 5, 2019Updated 6 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 9 months ago
- Exon-Intron Split Analysis (EISA) in R☆17Nov 3, 2025Updated 6 months ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- ☆15Jun 3, 2019Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆29Oct 11, 2025Updated 6 months ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Mar 20, 2026Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Apr 7, 2022Updated 4 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- a pipeline for single cell RNA-seq data analysis☆67Dec 11, 2023Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 2 months ago
- ☆10May 14, 2025Updated 11 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆22Feb 4, 2024Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)☆24Nov 3, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆20Apr 19, 2016Updated 10 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 8 months ago
- My presentation at RStudio::conf(2019), Austin, Tx - "The lazy and easily distracted report writer"☆17Feb 5, 2019Updated 7 years ago
- Toolbox package for organizing and working with TCGA data☆29Updated this week
- ☆32Mar 4, 2024Updated 2 years ago