csoneson / alevinQC
Create QC and summary reports for Alevin output
☆31Updated last week
Related projects ⓘ
Alternatives and complementary repositories for alevinQC
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆24Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆17Updated last month
- Chromatin segmentation in R☆19Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Identify and correct invalid gene symbols☆55Updated 5 months ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- R package wrapping bedtools☆37Updated 2 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last week
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆17Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆20Updated this week
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated last year
- scover☆22Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago