csoneson / alevinQCLinks
Create QC and summary reports for Alevin output
☆31Updated last month
Alternatives and similar repositories for alevinQC
Users that are interested in alevinQC are comparing it to the libraries listed below
Sorting:
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆68Updated this week
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- iread☆25Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Builds a PEP from SRA or GEO accessions☆53Updated last month
- ☆38Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 4 months ago
- R package wrapping bedtools☆42Updated 5 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago