Alternatives and similar repositories for leidenbase

Users that are interested in leidenbase are comparing it to the libraries listed below

• tidyomics / tidyomicsBlog
  The blog of tidyomics
  ☆14Updated 3 weeks ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated last year
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 3 months ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆28Updated 2 months ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆22Updated 6 months ago
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 2 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated 6 months ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 2 months ago
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆26Updated last year
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆17Updated 2 years ago
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 6 years ago
• willtownes / glmpca
  ☆95Updated last year
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆47Updated 4 years ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆21Updated last year
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆39Updated last year
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆26Updated 2 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• genesofeve / projectR
  ☆62Updated 4 months ago
• TomKellyGenetics / leiden
  Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
  ☆40Updated last year
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last month
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆18Updated 6 years ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago
• HCBravoLab / scTreeViz
  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions
  ☆10Updated 3 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated 3 weeks ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• stephaniehicks / scBatchPaper
  Code used for the single-cell RNA-Seq batch effects paper
  ☆10Updated 7 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 3 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago