cole-trapnell-lab / leidenbaseLinks
☆13Updated 5 months ago
Alternatives and similar repositories for leidenbase
Users that are interested in leidenbase are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 7 months ago
- The blog of tidyomics☆14Updated last month
- R package for benchmarking single cell analysis methods☆32Updated last year
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 3 months ago
- Core utilities for single-cell RNA-seq☆12Updated 4 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- A common data format and inference environment for single-cell trajectories 📦☆17Updated 2 years ago
- Gene-level general linear mixed model☆22Updated 7 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 5 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Clone of the Bioconductor repository for the basilisk package.☆28Updated last week
- ☆16Updated 6 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆13Updated 8 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- An introduction to matrix factorization and PCA and SVD.☆41Updated last year
- Implementation of the Leiden algorithm called by reticulate in R. (CRAN)☆40Updated last year
- ☆62Updated 5 months ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 8 months ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- Fast algorithms for GLM-PCA.☆14Updated 5 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago