☆13Mar 31, 2025Updated 11 months ago
Alternatives and similar repositories for leidenbase
Users that are interested in leidenbase are comparing it to the libraries listed below
Sorting:
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- Clone of the Bioconductor repository for the batchelor package.☆18Mar 13, 2025Updated 11 months ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- High-performance sparse data representation and manipulation in R☆11Dec 16, 2025Updated 2 months ago
- ☆11Sep 5, 2018Updated 7 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 7 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- Core utilities for single-cell RNA-seq☆12Apr 13, 2025Updated 10 months ago
- Flexible Mixed Integer Evolutionary Strategies☆16Mar 19, 2025Updated 11 months ago
- A unifying bioinformatics framework for organelle proteomics☆16Nov 5, 2025Updated 4 months ago
- Toolkit for Single-Cell Velocity☆59Jul 8, 2025Updated 7 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- An R Package for general purpose TIFF file I/O which plays nice with ImageJ☆17Jan 26, 2026Updated last month
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- ☆24Feb 25, 2026Updated last week
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Nov 7, 2016Updated 9 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Sep 5, 2022Updated 3 years ago
- Volume-regularized NMF☆18Apr 14, 2022Updated 3 years ago
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 9 months ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- (R) Efficient methods and operators for the sparse matrix classes in 'Matrix' (esp. CSR format or "RsparseMatrix")☆23Jun 21, 2024Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- XPtr Add-Ons for 'Rcpp'☆19Jul 21, 2025Updated 7 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- An R package to perform Spatial Fuzzy C-means☆29Nov 17, 2024Updated last year
- An R package for multivariate adaptive shrinkage.☆93Nov 7, 2024Updated last year
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24May 12, 2025Updated 9 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated last month
- General Purpose Optimization in R using C++: provides a unified C++ wrapper to call functions of the algorithms underlying the optim() s…☆21Oct 2, 2025Updated 5 months ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆48Feb 20, 2026Updated 2 weeks ago
- resource for unix and SGE beginners☆24Feb 17, 2023Updated 3 years ago
- Clone of the Bioconductor repository for the basilisk package.☆29Nov 8, 2025Updated 3 months ago
- ☆442Jan 8, 2026Updated last month
- Demonstrating best practices for bioinformatics command line tools☆25Jul 23, 2020Updated 5 years ago