Nesvilab / TMT-Integrator

Related projects ⓘ

Alternatives and complementary repositories for TMT-Integrator

• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆13Updated this week
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 11 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆40Updated 3 weeks ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆22Updated 4 years ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆26Updated last week
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated 6 months ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆28Updated 3 months ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆16Updated last month
• mathiaskalxdorf / IceR
  Quantitative proteomics workflow
  ☆15Updated 2 years ago
• IFIproteomics / LFQbench
  ☆24Updated last year
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• MASHUOA / HiTMaP
  An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics
  ☆15Updated last week
• Vitek-Lab / MSstats
  R package - MSstats
  ☆74Updated this week
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆25Updated last month
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆26Updated last year
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆26Updated 3 months ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 3 years ago
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆10Updated 3 weeks ago
• ipb-halle / MetFragR
  R package for MetFrag
  ☆24Updated 7 years ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆19Updated last month
• pnnl / leapR
  ☆17Updated 10 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 3 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated 4 months ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆16Updated 5 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆48Updated last year
• kusterlab / universal_spectrum_explorer
  ☆14Updated 2 years ago