Alternatives and similar repositories for TMT-Integrator

Users that are interested in TMT-Integrator are comparing it to the libraries listed below

• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated last month
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆16Updated last week
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 2 months ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated last week
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆84Updated last week
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆19Updated this week
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆17Updated last month
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 3 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆51Updated 3 weeks ago
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆57Updated last month
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆52Updated last week
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 5 months ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆17Updated last month
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 4 years ago
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated last year
• jaspershen / metID
  Construct database and identify metabolites.
  ☆6Updated 3 years ago
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆37Updated last year
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆46Updated 2 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆47Updated 5 months ago
• CompOmics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 4 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆46Updated last year
• jpquast / protti
  Picotti lab data analysis package.
  ☆63Updated 3 months ago
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆24Updated 3 months ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆15Updated this week